1. A benchmark testing ground for integrating homology modeling and protein docking. Issue 1 (13th November 2016) Authors: Bohnuud, Tanggis; Luo, Lingqi; Wodak, Shoshana J.; Bonvin, Alexandre M. J. J.; Weng, Zhiping; Vajda, Sandor; Schueler‐Furman, Ora; Kozakov, Dima Journal: Proteins Issue: Volume 85:Issue 1(2017) Page Start: 10 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Accounting for observed small angle X‐ray scattering profile in the protein–protein docking server cluspro. Issue 20 (10th June 2015) Authors: Xia, Bing; Mamonov, Artem; Leysen, Seppe; Allen, Karen N.; Strelkov, Sergei V.; Paschalidis, Ioannis Ch.; Vajda, Sandor; Kozakov, Dima Journal: Journal of computational chemistry Issue: Volume 36:Issue 20(2015) Page Start: 1568 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Assessing the binding properties of CASP14 targets and models. Issue 12 (19th August 2021) Authors: Egbert, Megan; Ghani, Usman; Ashizawa, Ryota; Kotelnikov, Sergei; Nguyen, Thu; Desta, Israel; Hashemi, Nasser; Padhorny, Dzmitry; Kozakov, Dima; Vajda, Sandor Other Names: Moult John guestEditor.; Kryshtafovych Andriy guestEditor. Journal: Proteins Issue: Volume 89:Issue 12(2021) Page Start: 1922 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. Blind prediction of homo‐ and hetero‐protein complexes: The CASP13‐CAPRI experiment. Issue 12 (25th October 2019) Authors: Lensink, Marc F.; Brysbaert, Guillaume; Nadzirin, Nurul; Velankar, Sameer; Chaleil, Raphaël A. G.; Gerguri, Tereza; Bates, Paul A.; Laine, Elodie; Carbone, Alessandra; Grudinin, Sergei; Kong, Ren; Liu, Ran‐Ran; Xu, Xi‐Ming; Shi, Hang; Chang, Shan; Eisenstein, Miriam; Karczynska, Agnieszka; Czaple... Journal: Proteins Issue: Volume 87:Issue 12(2019) Page Start: 1200 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Blind prediction of interfacial water positions in CAPRI. Issue 4 (23rd November 2013) Authors: Lensink, Marc F.; Moal, Iain H.; Bates, Paul A.; Kastritis, Panagiotis L.; Melquiond, Adrien S. J.; Karaca, Ezgi; Schmitz, Christophe; van, Marc; Bonvin, Alexandre M. J. J.; Eisenstein, Miriam; Jiménez‐García, Brian; Grosdidier, Solène; Solernou, Albert; Pérez‐Cano, Laura; Pallara, Chiara; Fernán... Journal: Proteins Issue: Volume 82:Issue 4(2014) Page Start: 620 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. Challenges in structural approaches to cell modeling. Issue 15 (31st July 2016) Authors: Im, Wonpil; Liang, Jie; Olson, Arthur; Zhou, Huan-Xiang; Vajda, Sandor; Vakser, Ilya A. Journal: Journal of molecular biology Issue: Volume 428:Issue 15(2016:Aug. 01) Page Start: 2943 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. ClusPro in rounds 38 to 45 of CAPRI: Toward combining template‐based methods with free docking. Issue 8 (23rd March 2020) Authors: Padhorny, Dzmitry; Porter, Kathryn A.; Ignatov, Mikhail; Alekseenko, Andrey; Beglov, Dmitri; Kotelnikov, Sergei; Ashizawa, Ryota; Desta, Israel; Alam, Nawsad; Sun, Zhuyezi; Brini, Emiliano; Dill, Ken; Schueler‐Furman, Ora; Vajda, Sandor; Kozakov, Dima Journal: Proteins Issue: Volume 88:Issue 8(2020) Page Start: 1082 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. ClusPro LigTBM: Automated Template-based Small Molecule Docking. Issue 11 (15th May 2020) Authors: Alekseenko, Andrey; Kotelnikov, Sergei; Ignatov, Mikhail; Egbert, Megan; Kholodov, Yaroslav; Vajda, Sandor; Kozakov, Dima Journal: Journal of molecular biology Issue: Volume 432:Issue 11(2020) Page Start: 3404 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. ClusPro-DC: Dimer Classification by the Cluspro Server for Protein–Protein Docking. Issue 3 (3rd February 2017) Authors: Yueh, Christine; Hall, David R.; Xia, Bing; Padhorny, Dzmitry; Kozakov, Dima; Vajda, Sandor Journal: Journal of molecular biology Issue: Volume 429:Issue 3(2017) Page Start: 372 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions. Issue 11 (23rd August 2013) Authors: Moretti, Rocco; Fleishman, Sarel J.; Agius, Rudi; Torchala, Mieczyslaw; Bates, Paul A.; Kastritis, Panagiotis L.; Rodrigues, João P. G. L. M.; Trellet, Mikaël; Bonvin, Alexandre M. J. J.; Cui, Meng; Rooman, Marianne; Gillis, Dimitri; Dehouck, Yves; Moal, Iain; Romero‐Durana, Miguel; Perez‐Cano, L... Journal: Proteins Issue: Volume 81:Issue 11(2013) Page Start: 1980 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗