1. 3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources. (30th November 2022) Authors: Varadi, Mihaly; Nair, Sreenath; Sillitoe, Ian; Tauriello, Gerardo; Anyango, Stephen; Bienert, Stefan; Borges, Clemente; Deshpande, Mandar; Green, Tim; Hassabis, Demis; Hatos, Andras; Hegedus, Tamas; Hekkelman, Maarten L; Joosten, Robbie; Jumper, John; Laydon, Agata; Molodenskiy, Dmitry; Piovesan,... Journal: GigaScience Issue: Volume 11(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Issue 1 (December 2016) Authors: Jiang, Yuxiang; Oron, Tal Ronnen; Clark, Wyatt T.; Bankapur, Asma R.; D'Andrea, Daniel; Lepore, Rosalba; Funk, Christopher S.; Kahanda, Indika; Verspoor, Karin M.; Ben-Hur, Asa; Koo, Da Chen Emily; Penfold-Brown, Duncan; Shasha, Dennis; Youngs, Noah; Bonneau, Richard; Lin, Alexandra; Sahraeian, S... Journal: Genome biology Issue: Volume 17:Issue 1(2016) Page Start: 1 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. An overview of comparative modelling and resources dedicated to large‐scale modelling of genome sequences. Issue 8 (1st August 2017) Authors: Lam, Su Datt; Das, Sayoni; Sillitoe, Ian; Orengo, Christine Journal: Acta crystallographica Issue: Volume 73:Issue 8(2017) Page Start: 628 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. CATH: an expanded resource to predict protein function through structure and sequence. Issue Volume 45:Issue D1(2017) (29th November 2016) Authors: Dawson, Natalie L.; Lewis, Tony E.; Das, Sayoni; Lees, Jonathan G.; Lee, David; Ashford, Paul; Orengo, Christine A.; Sillitoe, Ian Journal: Nucleic acids research Issue: Volume 45:Issue D1(2017) Page Start: D289 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. CATH: expanding the horizons of structure-based functional annotations for genome sequences. Issue Volume 47:Issue D1(2019) (6th November 2018) Authors: Sillitoe, Ian; Dawson, Natalie; Lewis, Tony E; Das, Sayoni; Lees, Jonathan G; Ashford, Paul; Tolulope, Adeyelu; Scholes, Harry M; Senatorov, Ilya; Bujan, Andra; Ceballos Rodriguez-Conde, Fatima; Dowling, Benjamin; Thornton, Janet; Orengo, Christine A Journal: Nucleic acids research Issue: Volume 47:Issue D1(2019) Page Start: D280 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. CATH: increased structural coverage of functional space. Issue Volume 49:Issue D1(2021) (25th November 2020) Authors: Sillitoe, Ian; Bordin, Nicola; Dawson, Natalie; Waman, Vaishali P; Ashford, Paul; Scholes, Harry M; Pang, Camilla S M; Woodridge, Laurel; Rauer, Clemens; Sen, Neeladri; Abbasian, Mahnaz; Le Cornu, Sean; Lam, Su Datt; Berka, Karel; Varekova, Ivana Hutařová; Svobodova, Radka; Lees, Jon; O... Journal: Nucleic acids research Issue: Volume 49:Issue D1(2021) Page Start: D266 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs. Issue 4 (1st June 2022) Authors: Sen, Neeladri; Anishchenko, Ivan; Bordin, Nicola; Sillitoe, Ian; Velankar, Sameer; Baker, David; Orengo, Christine Journal: Briefings in bioinformatics Issue: Volume 23:Issue 4(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Contrastive learning on protein embeddings enlightens midnight zone. Issue 2 (11th June 2022) Authors: Heinzinger, Michael; Littmann, Maria; Sillitoe, Ian; Bordin, Nicola; Orengo, Christine; Rost, Burkhard Journal: NAR genomics and bioinformatics Issue: Volume 4:Issue 2(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. Functional innovation from changes in protein domains and their combinations. (June 2016) Authors: Lees, Jonathan G; Dawson, Natalie L; Sillitoe, Ian; Orengo, Christine A Journal: Current opinion in structural biology Issue: Volume 38(2016) Page Start: 44 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. FunTree: advances in a resource for exploring and contextualising protein function evolution. Issue Volume 44:Issue D1(2016) (20th November 2015) Authors: Sillitoe, Ian; Furnham, Nicholas Journal: Nucleic acids research Issue: Volume 44:Issue D1(2016) Page Start: D317 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗