1. A systematic evaluation of normalization methods in quantitative label-free proteomics. (2nd October 2016) Authors: Välikangas, Tommi; Suomi, Tomi; Elo, Laura L Journal: Briefings in bioinformatics Issue: Volume 19:Number 1(2018:Jan.) Page Start: 1 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Benchmarking methods for detecting differential states between conditions from multi-subject single-cell RNA-seq data. Issue 5 (25th July 2022) Authors: Junttila, Sini; Smolander, Johannes; Elo, Laura L Journal: Briefings in bioinformatics Issue: Volume 23:Issue 5(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Cell type markers indicate distinct contributions of decidual stromal cells and natural killer cells in preeclampsia. Issue 5 (17th October 2022) Authors: Rytkönen, Kalle T; Adossa, Nigatu; Mahmoudian, Mehrad; Lönnberg, Tapio; Poutanen, Matti; Elo, Laura L Journal: Reproduction Issue: Volume 164:Issue 5(2022) Page Start: V9 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. Comparison of methods to detect differentially expressed genes between single-cell populations. (2nd July 2016) Authors: Jaakkola, Maria K; Seyednasrollah, Fatemeh; Mehmood, Arfa; Elo, Laura L Journal: Briefings in bioinformatics Issue: Volume 18:Number 5(2017:Sep.) Page Start: 735 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Computational deconvolution to estimate cell type-specific gene expression from bulk data. (12th January 2021) Authors: Jaakkola, Maria K; Elo, Laura L Journal: NAR genomics and bioinformatics Issue: Volume 3:issue 1(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. Correction to: PhosPiR: an automated phosphoproteomic pipeline in R. Issue 3 (8th April 2022) Authors: Hong, Ye; Flinkman, Dani; Suomi, Tomi; Pietilä, Sami; James, Peter; Coffey, Eleanor; Elo, Laura L Journal: Briefings in bioinformatics Issue: Volume 23:Issue 3(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Deep learning tools are top performers in long non-coding RNA prediction. (6th February 2022) Authors: Ammunét, Tea; Wang, Ning; Khan, Sofia; Elo, Laura L Journal: Briefings in functional genomics Issue: Volume 21:Number 3(2022) Page Start: 230 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Differential ATAC-seq and ChIP-seq peak detection using ROTS. (2nd July 2021) Authors: Faux, Thomas; Rytkönen, Kalle T; Mahmoudian, Mehrad; Paulin, Niklas; Junttila, Sini; Laiho, Asta; Elo, Laura L Journal: NAR genomics and bioinformatics Issue: Volume 3:issue 3(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. Estimating cell type-specific differential expression using deconvolution. Issue 1 (14th October 2021) Authors: Jaakkola, Maria K; Elo, Laura L Journal: Briefings in bioinformatics Issue: Volume 23:Issue 1(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. Intratumoral androgen levels are linked to TMPRSS2-ERG fusion in prostate cancer. Issue 9 (September 2018) Authors: Knuuttila, Matias; Mehmood, Arfa; Mäki-Jouppila, Jenni; Ryberg, Henrik; Taimen, Pekka; Knaapila, Juha; Ettala, Otto; Boström, Peter J; Ohlsson, Claes; Venäläinen, Mikko S; Laiho, Asta; Elo, Laura L; Sipilä, Petra; Mäkelä, Sari I; Poutanen, Matti Journal: Endocrine-related cancer Issue: Volume 25:Issue 9(2018) Page Start: 807 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗