1. The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. Issue Volume 45:Issue W1(2017) (5th June 2017) Authors: Grüning, Björn A.; Fallmann, Jörg; Yusuf, Dilmurat; Will, Sebastian; Erxleben, Anika; Eggenhofer, Florian; Houwaart, Torsten; Batut, Bérénice; Videm, Pavankumar; Bagnacani, Andrea; Wolfien, Markus; Lott, Steffen C.; Hoogstrate, Youri; Hess, Wolfgang R.; Wolkenhauer, Olaf; Hoffmann, Steve; Akalin,... Journal: Nucleic acids research Issue: Volume 45:Issue W1(2017) Page Start: W560 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. PiGx: reproducible genomics analysis pipelines with GNU Guix. Issue 12 (2nd October 2018) Authors: Wurmus, Ricardo; Uyar, Bora; Osberg, Brendan; Franke, Vedran; Gosdschan, Alexander; Wreczycka, Katarzyna; Ronen, Jonathan; Akalin, Altuna Journal: GigaScience Issue: Volume 7:Issue 12(2018) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Computational genomics with R. (2020) Authors: Akalin, Altuna Record Type: Book Extent: 1 online resource, illustrations View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. Transcriptional repression of NFKBIA triggers constitutive IKK‐ and proteasome‐independent p65/RelA activation in senescence. (18th January 2021) Authors: Kolesnichenko, Marina; Mikuda, Nadine; Höpken, Uta E; Kärgel, Eva; Uyar, Bora; Tufan, Ahmet Bugra; Milanovic, Maja; Sun, Wei; Krahn, Inge; Schleich, Kolja; von Hoff, Linda; Hinz, Michael; Willenbrock, Michael; Jungmann, Sabine; Akalin, Altuna; Lee, Soyoung; Schmidt‐Ullrich, Ruth; Schmitt, Clemens... Journal: EMBO journal Issue: Volume 40:Number 6(2021) Page Start: n/a Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. HOT or not: examining the basis of high-occupancy target regions. Issue 11 (22nd May 2019) Authors: Wreczycka, Katarzyna; Franke, Vedran; Uyar, Bora; Wurmus, Ricardo; Bulut, Selman; Tursun, Baris; Akalin, Altuna Journal: Nucleic acids research Issue: Volume 47:Issue 11(2019) Page Start: 5735 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. The conserved histone chaperone LIN‐53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans. Issue 6 (9th August 2019) Authors: Müthel, Stefanie; Uyar, Bora; He, Mei; Krause, Anne; Vitrinel, Burcu; Bulut, Selman; Vasiljevic, Djordje; Marchal, Iris; Kempa, Stefan; Akalin, Altuna; Tursun, Baris Journal: Aging cell Issue: Volume 18:Issue 6(2019) Page Start: n/a Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Alternative 3′ UTRs direct localization of functionally diverse protein isoforms in neuronal compartments. Issue 5 (22nd December 2018) Authors: Ciolli Mattioli, Camilla; Rom, Aviv; Franke, Vedran; Imami, Koshi; Arrey, Gerard; Terne, Mandy; Woehler, Andrew; Akalin, Altuna; Ulitsky, Igor; Chekulaeva, Marina Journal: Nucleic acids research Issue: Volume 47:Issue 5(2019) Page Start: 2560 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. RCAS: an RNA centric annotation system for transcriptome-wide regions of interest. Issue 10 (21st February 2017) Authors: Uyar, Bora; Yusuf, Dilmurat; Wurmus, Ricardo; Rajewsky, Nikolaus; Ohler, Uwe; Akalin, Altuna Journal: Nucleic acids research Issue: Volume 45:Issue 10(2017) Page Start: e91 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. Deciphering human ribonucleoprotein regulatory networks. Issue 2 (5th December 2018) Authors: Mukherjee, Neelanjan; Wessels, Hans-Hermann; Lebedeva, Svetlana; Sajek, Marcin; Ghanbari, Mahsa; Garzia, Aitor; Munteanu, Alina; Yusuf, Dilmurat; Farazi, Thalia; Hoell, Jessica I; Akat, Kemal M; Akalin, Altuna; Tuschl, Thomas; Ohler, Uwe Journal: Nucleic acids research Issue: Volume 47:Issue 2(2019) Page Start: 570 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. RNA polymerase II primes Polycomb‐repressed developmental genes throughout terminal neuronal differentiation. Issue 10 (16th October 2017) Authors: Ferrai, Carmelo; Torlai Triglia, Elena; Risner‐Janiczek, Jessica R; Rito, Tiago; Rackham, Owen JL; de Santiago, Inês; Kukalev, Alexander; Nicodemi, Mario; Akalin, Altuna; Li, Meng; Ungless, Mark A; Pombo, Ana Journal: Molecular systems biology Issue: Volume 13:Issue 10(2017:Oct.) Page Start: n/a Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗