Viral metagenomics : methods and protocols /: methods and protocols. (2018)

• Record Type: Book
• Further Information: Note: Edited by Vitantonio Pantaleo, Michela Chiumenti.
• Editors: Pantaleo, Vitantonio; Chiumenti, Michela
• Contents: Preface…Table of Contents…Contributing Authors…1. Host-Associated Bacteriophage Isolation and Preparation for Viral MetagenomicsJuris A. Grasis2. SmallRNAs Isolation from Tissues of Grapevine and Woody PlantsAnnalisa Giampetruzzi, Michela Chiumenti, Angelantonio Minafra, and Pasquale Saldarelli3. Double Stranded RNA-Enriched Preparations to Identify Viroids by Next Generation SequencingBeatriz Navarro and Francesco Di Serio4. Viral Double-Stranded RNAs (dsRNAs) from Plants: Alternative Nucleic Acid Substrates for High-Throughput SequencingArmelle Marais, Chantal Faure, Bernard Bergey, and Thierry Candresse5. Work-Up of Human Blood Samples for Deep Sequencing of HIV-1 GenomesMarion Cornelissen, Astrid Gall, Antoinette van der Kuyl, Chris Wymant, François Blanquart, Christophe Fraser, and Ben Berkhout6. Monolith Chromatography as Sample Preparation Step in Virome Studies of Water SamplesIon Gutiérrez-Aguirre, Denis Kutnjak, Nejc Rački, Matevž Rupar, and Maja Ravnikar7. Viral Metagenomics Approaches for High-Resolution Screening of Multiplexed Arthropod and Plant Viral CommunitiesSarah François, Denis Filloux, Emmanuel Fernandez, Mylène Ogliastro, and Philippe Roumagnac8. Different Approaches to Discover Mycovirus Associated to Marine OrganismsLuca Nerva, Giovanna C. Varese, and Massimo Turina 9. Use of siRNAs for Diagnosis of Viruses Associated to Woody Plants in Nurseries and Stock CollectionsNikoletta Czotter, János Molnár, Réka Pesti, Emese Demián, Dániel Baráth, Tünde Varga, and Éva Várallyay10. The Use of High Throughput Sequencing for the Study and Diagnosis of Plant Viruses and Viroids in PollenKris De Jonghe, Annelies Haegeman, Yoika Foucart, and Martine Maes11. High-Resolution Screening of Viral Communities and Identification of New Pathogens in Fish Using Next Generation SequencingArnfinn Lodden Økland, Are Nylund, Ali May, Adalberto Costessi, and Walter Pirovano12. Metagenomic Analyses of the Viruses Detected in Mycorrhizal Fungi and their Host OrchidHanako Shimura, Chikara Masuta, and Yasunori Koda13. DNA Multiple Sequence Alignment Guided by Protein Domains: The MSA-PAD 2.0 MethodBachir Balech, Alfonso Monaco, Michele Perniola, Monica Santamaria, Giacinto Donvito, Saverio Vicario, Giorgio Maggi, and Graziano Pesole14. From Whole Genome Shotgun Sequencing to Viral Community Profiling: The ViromeScan ToolSimone Rampelli and Silvia Turroni15. Shannon Entropy to Evaluate Substitution Rate Variation among Viral Nucleotide Positions in Datasets of Viral siRNAsAysan Ghasemzadeh, Marta Małgorzata ter Haar, Walter Pirovano, and Vitantonio Pantaleo16. Insect Virus Discovery by Metagenomic and Cell Culture-Based ApproachesFinny S. Varghese and Ronald P. van Rij.
• Publisher Details: New York : Humana Press
• Publication Date: 2018
• Copyright Date: 2018
• Extent: 1 online resource (217 pages)
• Subjects: 572.8629; Life sciences; Metagenomics; Molecular virology; Botany; Science -- Life Sciences -- Botany; Botany & plant sciences
• Languages: English
• ISBNs: 9781493976836
• Related ISBNs: 9781493976829
• Access Rights: Legal Deposit; Only available on premises controlled by the deposit library and to one user at any one time; The Legal Deposit Libraries (Non-Print Works) Regulations (UK).
• Access Usage: Restricted: Printing from this resource is governed by The Legal Deposit Libraries (Non-Print Works) Regulations (UK) and UK copyright law currently in force.