1. Integrating patient and whole-genome sequencing data to provide insights into the epidemiology of seasonal influenza A(H3N2) viruses. Issue 1 (21st December 2017) Authors: Goldstein, Emily J.; Harvey, William T.; Wilkie, Gavin S.; Shepherd, Samantha J.; MacLean, Alasdair R.; Murcia, Pablo R.; Gunson, Rory N. Journal: Microbial genomics Issue: Volume 4:Issue 1(2018) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Genome analysis provides insights into the epidemiology of infection with Flavobacterium psychrophilum among farmed salmonid fish in Sweden. Issue 12 (13th December 2018) Authors: Söderlund, Robert; Hakhverdyan, Mikhayil; Aspán, Anna; Jansson, Eva Journal: Microbial genomics Issue: Volume 4:Issue 12(2018) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data. Issue 12 (22nd November 2018) Authors: Sheppard, Anna E.; Stoesser, Nicole; German-Mesner, Ian; Vegesana, Kasi; Sarah Walker, A.; Crook, Derrick W.; Mathers, Amy J. Journal: Microbial genomics Issue: Volume 4:Issue 12(2018) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. Recombination produces coherent bacterial species clusters in both core and accessory genomes. Issue 5 (5th November 2015) Authors: Marttinen, Pekka; Croucher, Nicholas J.; Gutmann, Michael U.; Corander, Jukka; Hanage, William P. Journal: Microbial genomics Issue: Volume 1:Issue 5(2015) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Genome sequence comparisons of serial multi-drug-resistant Mycobacterium tuberculosis isolates over 21 years of infection in a single patient. Issue 5 (26th November 2015) Authors: Meumann, Ella M.; Globan, Maria; Fyfe, Janet A. M.; Leslie, David; Porter, Jessica L.; Seemann, Torsten; Denholm, Justin; Stinear, Timothy P. Journal: Microbial genomics Issue: Volume 1:Issue 5(2015) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. Shetti, a simple tool to parse, manipulate and search large datasets of sequences. Issue 5 (6th November 2015) Authors: Sobhy, Haitham Journal: Microbial genomics Issue: Volume 1:Issue 5(2015) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Whole-genome sequencing investigation of animal-skin-drum-associated UK anthrax cases reveals evidence of mixed populations and relatedness to a US case. Issue 5 (7th November 2015) Authors: Pullan, Steven T.; Pearson, Talima R.; Latham, Jennie; Mason, Joanne; Atkinson, Barry; Silman, Nigel J.; Marston, Chung K.; Sahl, Jason W.; Birdsell, Dawn; Hoffmaster, Alex R.; Keim, Paul; Vipond, Richard Journal: Microbial genomics Issue: Volume 1:Issue 5(2015) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Identifying copy number variation of the dominant virulence factors msa and p22 within genomes of the fish pathogen Renibacterium salmoninarum. Issue 4 (29th April 2016) Authors: Brynildsrud, Ola; Gulla, Snorre; Feil, Edward J.; Nørstebø, Simen Foyn; Rhodes, Linda D. Journal: Microbial genomics Issue: Volume 2:Issue 4(2016) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments. Issue 4 (29th April 2016) Authors: Page, Andrew J.; Taylor, Ben; Delaney, Aidan J.; Soares, Jorge; Seemann, Torsten; Keane, Jacqueline A.; Harris, Simon R. Journal: Microbial genomics Issue: Volume 2:Issue 4(2016) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. Expanded roles of leucine-responsive regulatory protein in transcription regulation of the Escherichia coli genome: Genomic SELEX screening of the regulation targets. Issue 1 (15th July 2015) Authors: Shimada, Tomohiro; Saito, Natsumi; Maeda, Michihisa; Tanaka, Kan; Ishihama, Akira Journal: Microbial genomics Issue: Volume 1:Issue 1(2015) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗