1. Benchmarking bacterial genome-wide association study methods using simulated genomes and phenotypes. Issue 3 (25th February 2020) Authors: Saber, Morteza M.; Shapiro, B. Jesse Journal: Microbial genomics Issue: Volume 6:Issue 3(2020) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Genome-wide association studies reveal distinct genetic correlates and increased heritability of antimicrobial resistance in Vibrio cholerae under anaerobic conditions. Issue 12 (5th December 2022) Authors: Creasy-Marrazzo, Ashton; Saber, Morteza M.; Kamat, Manasi; Bailey, Laura S.; Brinkley, Lindsey; Cato, Emilee; Begum, Yasmin; Rashid, Md. Mahbubur; Khan, Ashraful I.; Qadri, Firdausi; Basso, Kari B.; Shapiro, B. Jesse; Nelson, Eric J. Journal: Microbial genomics Issue: Volume 8:Issue 12(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Mitochondrial Recombination and Introgression during Speciation by Hybridization. (21st April 2017) Authors: Leducq, Jean-Baptiste; Henault, Mathieu; Charron, Guillaume; Nielly-Thibault, Lou; Terrat, Yves; Fiumera, Heather L.; Shapiro, B. Jesse; Landry, Christian R. Journal: Molecular biology and evolution Issue: Volume 34:Number 8(2017:Aug.) Page Start: 1947 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. Resistance, resilience, and functional redundancy of freshwater bacterioplankton communities facing a gradient of agricultural stressors in a mesocosm experiment. Issue 19 (12th August 2021) Authors: Barbosa da Costa, Naíla; Fugère, Vincent; Hébert, Marie‐Pier; Xu, Charles C.Y.; Barrett, Rowan D.H.; Beisner, Beatrix E.; Bell, Graham; Yargeau, Viviane; Fussmann, Gregor F.; Gonzalez, Andrew; Shapiro, B. Jesse Journal: Molecular ecology Issue: Volume 30:Issue 19(2021) Page Start: 4771 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Reuniting ecology and evolution. Issue 1 (17th December 2018) Authors: Shapiro, B. Jesse Journal: Environmental microbiology reports Issue: Volume 11:Issue 1(2019) Page Start: 13 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. Single nucleotide variants in Pseudomonas aeruginosa populations from sputum correlate with baseline lung function and predict disease progression in individuals with cystic fibrosis. Issue 4 (13th April 2023) Authors: Saber, Morteza M.; Donner, Jannik; Levade, Inès; Acosta, Nicole; Parkins, Michael D.; Boyle, Brian; Levesque, Roger C.; Nguyen, Dao; Shapiro, B. Jesse Journal: Microbial genomics Issue: Volume 9:Issue 4(2023) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. The evolution of realized niches within freshwater Synechococcus. (11th February 2020) Authors: Tromas, Nicolas; Taranu, Zofia E.; Castelli, Mathieu; Pimentel, Juliana S. M.; Pereira, Daniel A.; Marcoz, Romane; Shapiro, B. Jesse; Giani, Alessandra Journal: Environmental microbiology Issue: Volume 22:Number 4(2020) Page Start: 1238 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Translational activity is uncoupled from nucleic acid content in bacterial cells of the human gut microbiota. (1st January 2021) Authors: Taguer, Mariia; Shapiro, B. Jesse; Maurice, Corinne F. Journal: Gut microbes Issue: Volume 13:Isuse 1(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. Two cases of type-a Haemophilus influenzae meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes. Issue 4 (26th April 2020) Authors: Terrat, Yves; Farnaes, Lauge; Bradley, John; Tromas, Nicolas; Shapiro, B. Jesse Journal: Microbial genomics Issue: Volume 6:Issue 4(2020) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. Vibrio cholerae genomic diversity within and between patients. Issue 12 (7th December 2017) Authors: Levade, Inès; Terrat, Yves; Leducq, Jean-Baptiste; Weil, Ana A.; Mayo-Smith, Leslie M.; Chowdhury, Fahima; Khan, Ashraful I.; Boncy, Jacques; Buteau, Josiane; Ivers, Louise C.; Ryan, Edward T.; Charles, Richelle C.; Calderwood, Stephen B.; Qadri, Firdausi; Harris, Jason B.; LaRocque, Regina C.; S... Journal: Microbial genomics Issue: Volume 3:Issue 12(2017) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗