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3. Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies. Issue 1 (December 2016)

4. EffectiveDB—updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems. Issue Volume 44:Issue D1(2016) (20th November 2015)

5. EggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Issue Volume 44:Issue D1(2016) (17th November 2015)

6. EggNOG 6.0: enabling comparative genomics across 12 535 organisms. Issue Volume 51:Issue D1(2023) (18th November 2022)