1. A transformer architecture based on BERT and 2D convolutional neural network to identify DNA enhancers from sequence information. Issue 5 (5th February 2021) Authors: Le, Nguyen Quoc Khanh; Ho, Quang-Thai; Nguyen, Trinh-Trung-Duong; Ou, Yu-Yen Journal: Briefings in bioinformatics Issue: Volume 22:Issue 5(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. ActTRANS: Functional classification in active transport proteins based on transfer learning and contextual representations. (August 2021) Authors: Taju, Semmy Wellem; Shah, Syed Muazzam Ali; Ou, Yu-Yen Journal: Computational biology and chemistry Issue: Volume 93(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Addressing data imbalance problems in ligand-binding site prediction using a variational autoencoder and a convolutional neural network. Issue 6 (28th July 2021) Authors: Nguyen, Trinh-Trung-Duong; Nguyen, Duc-Khanh; Ou, Yu-Yen Journal: Briefings in bioinformatics Issue: Volume 22:Issue 6(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. DeepSIRT: A deep neural network for identification of sirtuin targets and their subcellular localizations. (August 2021) Authors: Shah, Syed Muazzam Ali; Taju, Semmy Wellem; Dlamini, Bongani Brian; Ou, Yu-Yen Journal: Computational biology and chemistry Issue: Volume 93(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. FAD-BERT: Improved prediction of FAD binding sites using pre-training of deep bidirectional transformers. (April 2021) Authors: Ho, Quang-Thai; Nguyen, Trinh-Trung-Duong; Khanh Le, Nguyen Quoc; Ou, Yu-Yen Journal: Computers in biology and medicine Issue: Volume 131(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. GT-Finder: Classify the family of glucose transporters with pre-trained BERT language models. (April 2021) Authors: Ali Shah, Syed Muazzam; Taju, Semmy Wellem; Ho, Quang-Thai; Nguyen, Trinh-Trung-Duong; Ou, Yu-Yen Journal: Computers in biology and medicine Issue: Volume 131(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Incorporating a transfer learning technique with amino acid embeddings to efficiently predict N-linked glycosylation sites in ion channels. (March 2021) Authors: Nguyen, Trinh-Trung-Duong; Le, Nguyen-Quoc-Khanh; Tran, The-Anh; Pham, Dinh-Minh; Ou, Yu-Yen Journal: Computers in biology and medicine Issue: Volume 130(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Incorporating efficient radial basis function networks and significant amino acid pairs for predicting GTP binding sites in transport proteins. Issue 19 (December 2016) Authors: Le, Nguyen-Quoc-Khanh; Ou, Yu-Yen Journal: BMC bioinformatics Issue: Volume 17:Issue 19(2016) Page Start: 183 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. Incorporating efficient radial basis function networks and significant amino acid pairs for predicting GTP binding sites in transport proteins. Issue 19 (December 2016) Authors: Le, Nguyen-Quoc-Khanh; Ou, Yu-Yen Journal: BMC bioinformatics Issue: Volume 17:Issue 19(2016) Page Start: 183 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. Incorporating post translational modification information for enhancing the predictive performance of membrane transport proteins. (December 2018) Authors: Le, Nguyen Quoc Khanh; Sandag, Green Arther; Ou, Yu-Yen Journal: Computational biology and chemistry Issue: Volume 77(2018) Page Start: 251 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗