1. A practical guide to mechanistic systems modeling in biology using a logic-based approach. Issue 4 (16th October 2020) Authors: Niarakis, Anna; Helikar, Tomáš Journal: Briefings in bioinformatics Issue: Volume 22:Issue 4(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology. Issue 4 (8th June 2022) Authors: Niarakis, Anna; Waltemath, Dagmar; Glazier, James; Schreiber, Falk; Keating, Sarah M; Nickerson, David; Chaouiya, Claudine; Siegel, Anne; Noël, Vincent; Hermjakob, Henning; Helikar, Tomáš; Soliman, Sylvain; Calzone, Laurence Journal: Briefings in bioinformatics Issue: Volume 23:Issue 4(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Community-driven roadmap for integrated disease maps. (23rd April 2018) Authors: Ostaszewski, Marek; Gebel, Stephan; Kuperstein, Inna; Mazein, Alexander; Zinovyev, Andrei; Dogrusoz, Ugur; Hasenauer, Jan; Fleming, Ronan M T; Le Novère, Nicolas; Gawron, Piotr; Ligon, Thomas; Niarakis, Anna; Nickerson, David; Weindl, Daniel; Balling, Rudi; Barillot, Emmanuel; Auffray, Charles; S... Journal: Briefings in bioinformatics Issue: Volume 20:Number 2(2019) Page Start: 659 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms. Issue 10 (19th October 2021) Authors: Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta‐Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gómez, Luis Cristóba... Journal: Molecular systems biology Issue: Volume 17:Issue 10(2021) Page Start: n/a Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms. Issue 10 (19th October 2021) Authors: Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta‐Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gómez, Luis Cristóba... Journal: Molecular systems biology Issue: Volume 17:Issue 10(2021) Page Start: n/a Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms. Issue 12 (23rd December 2021) Authors: Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta‐Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gómez, Luis Cristóba... Journal: Molecular systems biology Issue: Volume 17:Issue 12(2021) Page Start: n/a Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Data integration in logic-based models of biological mechanisms. Issue 28 (December 2021) Authors: Hall, Benjamin A.; Niarakis, Anna Journal: Current opinion in systems biology Issue: Issue 28(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Detection of a latent soluble form of membrane type 1 matrix metalloprotease bound with tissue inhibitor of matrix metalloproteinases‐2 in periprosthetic tissues and fluids from loose arthroplasty endoprostheses. (25th October 2013) Authors: Niarakis, Anna; Giannopoulou, Eleftheria; Ravazoula, Panagiota; Panagiotopoulos, Elias; Zarkadis, Ioannis K.; Aletras, Alexios J. Journal: FEBS journal Issue: Volume 280:Number 24(2013) Page Start: 6541 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. Effects of proteasome inhibitors on cytokines, metalloproteinases and their inhibitors and collagen type-I expression in periprosthetic tissues and fibroblasts from loose arthroplasty endoprostheses. (2nd November 2019) Authors: Niarakis, Anna; Giannopoulou, Eleftheria; Syggelos, Spyros A.; Panagiotopoulos, Elias Journal: Connective tissue research Issue: Volume 60:Number 6(2019) Page Start: 555 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis. (20th April 2020) Authors: Singh, Vidisha; Kalliolias, George D; Ostaszewski, Marek; Veyssiere, Maëva; Pilalis, Eleftherios; Gawron, Piotr; Mazein, Alexander; Bonnet, Eric; Petit-Teixeira, Elisabeth; Niarakis, Anna Journal: Database Issue: Volume 2020(2020) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗