1. A methodology for discovering novel brain-relevant peptides: Combination of ribosome profiling and peptidomics. (February 2020) Authors: Tharakan, Ravi; Kreimer, Simion; Ubaida-Mohien, Ceereena; Lavoie, Joelle; Olexiouk, Volodimir; Menschaert, Gerben; Ingolia, Nicholas T.; Cole, Robert N.; Ishizuka, Koko; Sawa, Akira; Nucifora, Leslie G. Journal: Neuroscience research Issue: Volume 151(2020) Page Start: 31 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites. Issue 23 (2nd October 2014) Authors: Koch, Alexander; Gawron, Daria; Steyaert, Sandra; Ndah, Elvis; Crappé, Jeroen; De Keulenaer, Sarah; De Meester, Ellen; Ma, Ming; Shen, Ben; Gevaert, Kris; Van Criekinge, Wim; Van Damme, Petra; Menschaert, Gerben; Pandey, Akhilesh; Pevzner, Pavel A. Journal: Proteomics Issue: Volume 14:Issue 23/24(2014) Page Start: 2688 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. An update on sORFs.org: a repository of small ORFs identified by ribosome profiling. Issue Volume 46:Issue D1(2018) (13th November 2017) Authors: Olexiouk, Volodimir; Van Criekinge, Wim; Menschaert, Gerben Journal: Nucleic acids research Issue: Volume 46:Issue D1(2018) Page Start: D497 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. EIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs. Issue 13 (24th May 2017) Authors: Fijałkowska, Daria; Verbruggen, Steven; Ndah, Elvis; Jonckheere, Veronique; Menschaert, Gerben; Van Damme, Petra Journal: Nucleic acids research Issue: Volume 45:Issue 13(2017) Page Start: 7997 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Explainability in transformer models for functional genomics. Issue 5 (8th April 2021) Authors: Clauwaert, Jim; Menschaert, Gerben; Waegeman, Willem Journal: Briefings in bioinformatics Issue: Volume 22:Issue 5(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. MQC: A post-mapping data exploration tool for ribosome profiling. (November 2019) Authors: Verbruggen, Steven; Menschaert, Gerben Journal: Computer methods and programs in biomedicine Issue: Volume 181(2020) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Proteogenomics from a bioinformatics angle: A growing field. Issue 5 (15th December 2015) Authors: Menschaert, Gerben; Fenyö, David Other Names: Valkenborg Dirk guestEditor. Journal: Mass spectrometry reviews Issue: Volume 36:Issue 5(2017:Sep./Oct.) Page Start: 584 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Short Open Reading Frames and Their Encoded Peptides. Issue 15 (26th June 2018) Authors: Rothnagel, Joseph; Menschaert, Gerben Journal: Proteomics Issue: Volume 18:Issue 15(2018) Page Start: n/a Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. SORFs.org: a repository of small ORFs identified by ribosome profiling. Issue Volume 44:Issue D1(2016) (2nd November 2015) Authors: Olexiouk, Volodimir; Crappé, Jeroen; Verbruggen, Steven; Verhegen, Kenneth; Martens, Lennart; Menschaert, Gerben Journal: Nucleic acids research Issue: Volume 44:Issue D1(2016) Page Start: D324 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. TIS Transformer: remapping the human proteome using deep learning. Issue 1 (3rd March 2023) Authors: Clauwaert, Jim; McVey, Zahra; Gupta, Ramneek; Menschaert, Gerben Journal: NAR genomics and bioinformatics Issue: Volume 5:Issue 1(2023) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗