1. A graph-based approach to analyze flux-balanced pathways in metabolic networks. (March 2018) Authors: Arabzadeh, Mona; Saheb Zamani, Morteza; Sedighi, Mehdi; Marashi, Sayed-Amir Journal: Bio systems Issue: Volume 165(2018) Page Start: 40 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. A multiscale agent-based framework integrated with a constraint-based metabolic network model of cancer for simulating avascular tumor growth. Issue 9 (24th July 2017) Authors: Ghadiri, Mehrdad; Heidari, Mahshid; Marashi, Sayed-Amir; Mousavi, Seyed Hasan Journal: Molecular bioSystems Issue: Volume 13:Issue 9(2017) Page Start: 1888 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. A sperm-specific proteome-scale metabolic network model identifies non-glycolytic genes for energy deficiency in asthenozoospermia. (4th March 2017) Authors: Asghari, Arvand; Marashi, Sayed-Amir; Ansari-Pour, Naser Journal: Systems biology in reproductive medicine Issue: Volume 63:Number 2(2017:Apr.) Page Start: 100 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. A system architecture for parallel analysis of flux-balanced metabolic pathways. (October 2020) Authors: Arabzadeh, Mona; Sedighi, Mehdi; Saheb Zamani, Morteza; Marashi, Sayed-Amir Journal: Computational biology and chemistry Issue: Volume 88(2020) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Accounting for robustness in modeling signal transduction responses. (2nd November 2018) Authors: Oftadeh, Mohammad Omid; Marashi, Sayed-Amir Journal: Journal of receptor and signal transduction research Issue: Volume 38:Number 5/6(2018) Page Start: 442 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. CAMAMED: a pipeline for composition-aware mapping-based analysis of metagenomic data. (6th January 2021) Authors: Norouzi-Beirami, Mohammad H; Marashi, Sayed-Amir; Banaei-Moghaddam, Ali M; Kavousi, Kaveh Journal: NAR genomics and bioinformatics Issue: Volume 3:issue 1(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. CAMWI: Detecting protein complexes using weighted clustering coefficient and weighted density. (October 2015) Authors: lakizadeh, Amir; Jalili, Saeed; Marashi, Sayed-Amir Journal: Computational biology and chemistry Issue: Volume 58(2015) Page Start: 231 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Cancer driver gene discovery in transcriptional regulatory networks using influence maximization approach. (November 2019) Authors: Rahimi, Majid; Teimourpour, Babak; Marashi, Sayed-Amir Journal: Computers in biology and medicine Issue: Volume 114(2019) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. Critical assessment of genome-scale metabolic models of Arabidopsis thaliana. (26th January 2022) Authors: Zamani Amirzakaria, Javad; Marashi, Sayed-Amir; Malboobi, Mohammad Ali; Lohrasebi, Tahmineh; Forouzan, Esmail Journal: Molecular omics Issue: Volume 18:Number 4(2022) Page Start: 328 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. EIA-CNDP: An exact iterative algorithm for critical node detection problem. (March 2021) Authors: Rezaei, Javad; Zare-Mirakabad, Fatemeh; MirHassani, Seyed Ali; Marashi, Sayed-Amir Journal: Computers & operations research Issue: Volume 127(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗