1. A Comparison of Methods for Quantifying Prediction Uncertainty in Systems Biology. Issue 26 (2019) Authors: Villaverde, Alejandro F.; Raimúndez, Elba; Hasenauer, Jan; Banga, Julio R. Journal: IFAC-PapersOnLine Issue: Volume 52:Issue 26(2019) Page Start: 45 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. A protocol for dynamic model calibration. Issue 1 (9th October 2021) Authors: Villaverde, Alejandro F; Pathirana, Dilan; Fröhlich, Fabian; Hasenauer, Jan; Banga, Julio R Journal: Briefings in bioinformatics Issue: Volume 23:Issue 1(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Alveolar macrophage transcriptomic profiling in COPD shows major lipid metabolism changes. Issue 3 (13th September 2021) Authors: Fujii, Wataru; Kapellos, Theodore S.; Baßler, Kevin; Händler, Kristian; Holsten, Lisa; Knoll, Rainer; Warnat-Herresthal, Stefanie; Oestreich, Marie; Hinkley, Emily R.; Hasenauer, Jan; Pizarro, Carmen; Thiele, Christoph; Aschenbrenner, Anna C.; Ulas, Thomas; Skowasch, Dirk; Schultze, Joachim L. Journal: ERJ open research Issue: Volume 7:Issue 3(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. BioSimulators: a central registry of simulation engines and services for recommending specific tools. Issue Volume 50:Issue W1(2022) (7th May 2022) Authors: Shaikh, Bilal; Smith, Lucian P; Vasilescu, Dan; Marupilla, Gnaneswara; Wilson, Michael; Agmon, Eran; Agnew, Henry; Andrews, Steven S; Anwar, Azraf; Beber, Moritz E; Bergmann, Frank T; Brooks, David; Brusch, Lutz; Calzone, Laurence; Choi, Kiri; Cooper, Joshua; Detloff, John; Drawert, Brian; Dumont... Journal: Nucleic acids research Issue: Volume 50:Issue W1(2022) Page Start: W108 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Challenges in the calibration of large-scale ordinary differential equation models. Issue 26 (2019) Authors: Kapfer, Eva-Maria; Stapor, Paul; Hasenauer, Jan Journal: IFAC-PapersOnLine Issue: Volume 52:Issue 26(2019) Page Start: 58 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. Closing the gap between formats for storing layout information in systems biology. (5th July 2019) Authors: Hoksza, David; Gawron, Piotr; Ostaszewski, Marek; Hasenauer, Jan; Schneider, Reinhard Journal: Briefings in bioinformatics Issue: Volume 21:Number 4(2020) Page Start: 1249 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Closing the gap between formats for storing layout information in systems biology. Issue 1 (21st February 2020) Authors: Hoksza, David; Gawron, Piotr; Ostaszewski, Marek; Hasenauer, Jan; Schneider, Reinhard Journal: Briefings in bioinformatics Issue: Volume 22:Issue 1(2021) Page Start: 608 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Community-driven roadmap for integrated disease maps. (23rd April 2018) Authors: Ostaszewski, Marek; Gebel, Stephan; Kuperstein, Inna; Mazein, Alexander; Zinovyev, Andrei; Dogrusoz, Ugur; Hasenauer, Jan; Fleming, Ronan M T; Le Novère, Nicolas; Gawron, Piotr; Ligon, Thomas; Niarakis, Anna; Nickerson, David; Weindl, Daniel; Balling, Rudi; Barillot, Emmanuel; Auffray, Charles; S... Journal: Briefings in bioinformatics Issue: Volume 20:Number 2(2019) Page Start: 659 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms. Issue 10 (19th October 2021) Authors: Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta‐Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gómez, Luis Cristóba... Journal: Molecular systems biology Issue: Volume 17:Issue 10(2021) Page Start: n/a Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms. Issue 10 (19th October 2021) Authors: Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta‐Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gómez, Luis Cristóba... Journal: Molecular systems biology Issue: Volume 17:Issue 10(2021) Page Start: n/a Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗