1. Link between the numbers of particles and variants founding new HIV-1 infections depends on the timing of transmission. Issue 1 (30th January 2019) Authors: Thompson, Robin N; Wymant, Chris; Spriggs, Rebecca A; Raghwani, Jayna; Fraser, Christophe; Lythgoe, Katrina A Journal: Virus evolution Issue: Volume 5:Issue 1(2019) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Molecular Epidemiology of HIV-1 Subtype B Reveals Heterogeneous Transmission Risk: Implications for Intervention and Control. (26th February 2018) Authors: Volz, Erik M; Le Vu, Stephane; Ratmann, Oliver; Tostevin, Anna; Dunn, David; Orkin, Chloe; O'Shea, Siobhan; Delpech, Valerie; Brown, Alison; Gill, Noel; Fraser, Christophe Journal: Journal of infectious diseases Issue: Volume 217:Number 10(2018) Page Start: 1522 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver. Issue 1 (18th May 2018) Authors: Wymant, Chris; Blanquart, François; Golubchik, Tanya; Gall, Astrid; Bakker, Margreet; Bezemer, Daniela; Croucher, Nicholas J; Hall, Matthew; Hillebregt, Mariska; Ong, Swee Hoe; Ratmann, Oliver; Albert, Jan; Bannert, Norbert; Fellay, Jacques; Fransen, Katrien; Gourlay, Annabelle; Grabowski, M Kate... Journal: Virus evolution Issue: Volume 4:Issue 1(2018) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: a population-based study in Rakai, Uganda. Issue 3 (March 2020) Authors: Ratmann, Oliver; Kagaayi, Joseph; Hall, Matthew; Golubchick, Tanya; Kigozi, Godfrey; Xi, Xiaoyue; Wymant, Chris; Nakigozi, Gertrude; Abeler-Dörner, Lucie; Bonsall, David; Gall, Astrid; Hoppe, Anne; Kellam, Paul; Bazaale, Jeremiah; Kalibbala, Sarah; Laeyendecker, Oliver; Lessler, Justin; Nalugoda,... Journal: Lancet Issue: Volume 7:Issue 3(2020) Page Start: e173 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Assessment of epidemic projections using recent HIV survey data in South Africa: a validation analysis of ten mathematical models of HIV epidemiology in the antiretroviral therapy era. Issue 10 (October 2015) Authors: Eaton, Jeffrey W; Bacaër, Nicolas; Bershteyn, Anna; Cambiano, Valentina; Cori, Anne; Dorrington, Rob E; Fraser, Christophe; Gopalappa, Chaitra; Hontelez, Jan A C; Johnson, Leigh F; Klein, Daniel J; Phillips, Andrew N; Pretorius, Carel; Stover, John; Rehle, Thomas M; Hallett, Timothy B Journal: Lancet Issue: Volume 3:Issue 10(2015) Page Start: e598 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. The value of open-source clinical science in pandemic response: lessons from ISARIC. Issue 12 (December 2021) Authors: Abbas, Ali; Abdukahil, Sheryl Ann; Abdulkadir, Nurul Najmee; Abe, Ryuzo; Abel, Laurent; Absil, Lara; Acharya, Subhash; Acker, Andrew; Adachi, Shingo; Adam, Elisabeth; Adrião, Diana; Ageel, Saleh Al; Ahmed, Shakeel; Ain, Quratul; Ainscough, Kate; Aisa, Tharwat; Ait Hssain, Ali; Ait Tamlihat, Youne... Journal: Lancet infectious diseases Issue: Volume 21:Issue 12(2021) Page Start: 1623 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Many but small HIV-1 non-B transmission chains in the Netherlands. (1st January 2022) Authors: Bezemer, Daniela; Blenkinsop, Alexandra; Hall, Matthew; van Sighem, Ard; Cornelissen, Marion; Wessels, Els; van Kampen, Jeroen; van de Laar, Thijs; Reiss, Peter; Fraser, Christophe; Ratmann, Oliver Journal: AIDS Issue: Volume 36:Number 1(2022) Page Start: 83 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Pervasive and non-random recombination in near full-length HIV genomes from Uganda. Issue 1 (11th February 2020) Authors: Grant, Heather E; Hodcroft, Emma B; Ssemwanga, Deogratius; Kitayimbwa, John M; Yebra, Gonzalo; Esquivel Gomez, Luis Roger; Frampton, Dan; Gall, Astrid; Kellam, Paul; de Oliveira, Tulio; Bbosa, Nicholas; Nsubuga, Rebecca N; Kibengo, Freddie; Kwan, Tsz Ho; Lycett, Samantha; Kao, Rowland; Robertson,... Journal: Virus evolution Issue: Volume 6:Issue 1(2020) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. Human Immunodeficiency Virus (HIV) Genetic Diversity Informs Stage of HIV-1 Infection Among Patients Receiving Antiretroviral Therapy in Botswana. (2nd June 2021) Authors: Ragonnet-Cronin, Manon; Golubchik, Tanya; Moyo, Sikhulile; Fraser, Christophe; Essex, Max; Novitsky, Vlad; Volz, Erik Journal: Journal of infectious diseases Issue: Volume 225:Number 8(2022) Page Start: 1330 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study. Issue 1 (January 2022) Authors: Twohig, Katherine A; Nyberg, Tommy; Zaidi, Asad; Thelwall, Simon; Sinnathamby, Mary A; Aliabadi, Shirin; Seaman, Shaun R; Harris, Ross J; Hope, Russell; Lopez-Bernal, Jamie; Gallagher, Eileen; Charlett, Andre; De Angelis, Daniela; Presanis, Anne M; Dabrera, Gavin; Koshy, Cherian; Ash, Amy; Wise, ... Journal: Lancet infectious diseases Issue: Volume 22:Issue 1(2022) Page Start: 35 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗