1. A machine learning framework for discovery and enrichment of metagenomics metadata from open access publications. (11th August 2022) Authors: Nassar, Maaly; Rogers, Alexander B; Talo', Francesco; Sanchez, Santiago; Shafique, Zunaira; Finn, Robert D; McEntyre, Johanna Journal: GigaScience Issue: Volume 11(2022) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments. Issue 5 (11th May 2018) Authors: Almeida, Alexandre; Mitchell, Alex L; Tarkowska, Aleksandra; Finn, Robert D Journal: GigaScience Issue: Volume 7:Issue 5(2018) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Issue 2 (4th November 2020) Authors: Hufsky, Franziska; Lamkiewicz, Kevin; Almeida, Alexandre; Aouacheria, Abdel; Arighi, Cecilia; Bateman, Alex; Baumbach, Jan; Beerenwinkel, Niko; Brandt, Christian; Cacciabue, Marco; Chuguransky, Sara; Drechsel, Oliver; Finn, Robert D; Fritz, Adrian; Fuchs, Stephan; Hattab, Georges; Hauschild, Anne... Journal: Briefings in bioinformatics Issue: Volume 22:Issue 2(2021) Page Start: 642 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. Issue Volume 46:Issue D1(2018) (23rd October 2017) Authors: Mitchell, Alex L; Scheremetjew, Maxim; Denise, Hubert; Potter, Simon; Tarkowska, Aleksandra; Qureshi, Matloob; Salazar, Gustavo A; Pesseat, Sebastien; Boland, Miguel A; Hunter, Fiona M I; ten Hoopen, Petra; Alako, Blaise; Amid, Clara; Wilkinson, Darren J; Curtis, Thomas P; Cochrane... Journal: Nucleic acids research Issue: Volume 46:Issue D1(2018) Page Start: D726 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. Issue Volume 46:Issue D1(2018) (30th October 2017) Authors: Kersey, Paul Julian; Allen, James E; Allot, Alexis; Barba, Matthieu; Boddu, Sanjay; Bolt, Bruce J; Carvalho-Silva, Denise; Christensen, Mikkel; Davis, Paul; Grabmueller, Christoph; Kumar, Navin; Liu, Zicheng; Maurel, Thomas; Moore, Ben; McDowall, Mark D; Maheswari, Uma; Naamati, Guy; Newman, Vict... Journal: Nucleic acids research Issue: Volume 46:Issue D1(2018) Page Start: D802 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. Erratum to: Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes. (1st July 2021) Authors: Tagirdzhanova, Gulnara; Saary, Paul; Tingley, Jeffrey P; Díaz-Escandón, David; Abbott, D Wade; Finn, Robert D; Spribille, Toby Journal: Genome biology and evolution Issue: Volume 13:Number 6(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes. Issue Volume 47:Issue D1(2019) (26th October 2018) Authors: Richardson, Lorna J; Rawlings, Neil D; Salazar, Gustavo A; Almeida, Alexandre; Haft, David R; Ducq, Gregory; Sutton, Granger G; Finn, Robert D Journal: Nucleic acids research Issue: Volume 47:Issue D1(2019) Page Start: D564 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation. Issue Volume 48:Issue D1(2020) (16th November 2019) Authors: Sillitoe, Ian; Andreeva, Antonina; Blundell, Tom L; Buchan, Daniel W A; Finn, Robert D; Gough, Julian; Jones, David; Kelley, Lawrence A; Paysan-Lafosse, Typhaine; Lam, Su Datt; Murzin, Alexey G; Pandurangan, Arun Prasad; Salazar, Gustavo A; Skwark, Marcin J; Sternberg, Michael J E; Velankar, Same... Journal: Nucleic acids research Issue: Volume 48:Issue D1(2020) Page Start: D314 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. HMMER web server: 2018 update. Issue Volume 46:Issue W1(2018) (14th June 2018) Authors: Potter, Simon C; Luciani, Aurélien; Eddy, Sean R; Park, Youngmi; Lopez, Rodrigo; Finn, Robert D Journal: Nucleic acids research Issue: Volume 46:Issue W1(2018) Page Start: W200 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. InterPro in 2019: improving coverage, classification and access to protein sequence annotations. Issue Volume 47:Issue D1(2019) (6th November 2018) Authors: Mitchell, Alex L; Attwood, Teresa K; Babbitt, Patricia C; Blum, Matthias; Bork, Peer; Bridge, Alan; Brown, Shoshana D; Chang, Hsin-Yu; El-Gebali, Sara; Fraser, Matthew I; Gough, Julian; Haft, David R; Huang, Hongzhan; Letunic, Ivica; Lopez, Rodrigo; Luciani, Aurélien; Madeira, Fabio; Marchler-Bau... Journal: Nucleic acids research Issue: Volume 47:Issue D1(2019) Page Start: D351 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗