1. Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation. Issue Volume 46:Issue D1(2018) (6th November 2017) Authors: Pujar, Shashikant; O'Leary, Nuala A; Farrell, Catherine M; Loveland, Jane E; Mudge, Jonathan M; Wallin, Craig; Girón, Carlos G; Diekhans, Mark; Barnes, If; Bennett, Ruth; Berry, Andrew E; Cox, Eric; Davidson, Claire; Goldfarb, Tamara; Gonzalez, Jose M; Hunt, Toby; Jackson, John; Joardar, Vinita; ... Journal: Nucleic acids research Issue: Volume 46:Issue D1(2018) Page Start: D221 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. GENCODE 2021. Issue Volume 49:Issue D1(2021) (3rd December 2020) Authors: Frankish, Adam; Diekhans, Mark; Jungreis, Irwin; Lagarde, Julien; Loveland, Jane E; Mudge, Jonathan M; Sisu, Cristina; Wright, James C; Armstrong, Joel; Barnes, If; Berry, Andrew; Bignell, Alexandra; Boix, Carles; Carbonell Sala, Silvia; Cunningham, Fiona; Di Domenico, Tomás; Donal... Journal: Nucleic acids research Issue: Volume 49:Issue D1(2021) Page Start: D916 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. GENCODE reference annotation for the human and mouse genomes. Issue Volume 47:Issue D1(2019) (24th October 2018) Authors: Frankish, Adam; Diekhans, Mark; Ferreira, Anne-Maud; Johnson, Rory; Jungreis, Irwin; Loveland, Jane; Mudge, Jonathan M; Sisu, Cristina; Wright, James; Armstrong, Joel; Barnes, If; Berry, Andrew; Bignell, Alexandra; Carbonell Sala, Silvia; Chrast, Jacqueline; Cunningham, Fiona; Di Domeni... Journal: Nucleic acids research Issue: Volume 47:Issue D1(2019) Page Start: D766 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. GENCODE: reference annotation for the human and mouse genomes in 2023. Issue Volume 51:Issue D1(2023) (24th November 2022) Authors: Frankish, Adam; Carbonell-Sala, Sílvia; Diekhans, Mark; Jungreis, Irwin; Loveland, Jane E; Mudge, Jonathan M; Sisu, Cristina; Wright, James C; Arnan, Carme; Barnes, If; Banerjee, Abhimanyu; Bennett, Ruth; Berry, Andrew; Bignell, Alexandra; Boix, Carles; Calvet, Ferriol; Cerdán-Véle... Journal: Nucleic acids research Issue: Volume 51:Issue D1(2023) Page Start: D942 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Genomic legacy of the African cheetah, Acinonyx jubatus. Issue 1 (December 2015) Authors: Dobrynin, Pavel; Liu, Shiping; Tamazian, Gaik; Xiong, Zijun; Yurchenko, Andrey; Krasheninnikova, Ksenia; Kliver, Sergey; Schmidt-Küntzel, Anne; Koepfli, Klaus-Peter; Johnson, Warren; Kuderna, Lukas; García-Pérez, Raquel; Manuel, Marc; Godinez, Ricardo; Komissarov, Aleksey; Makunin, Alexey; Brukhi... Journal: Genome biology Issue: Volume 16:Issue 1(2015) Page Start: 1 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. HalSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments. Issue 6 (28th May 2020) Authors: Krasheninnikova, Ksenia; Diekhans, Mark; Armstrong, Joel; Dievskii, Aleksei; Paten, Benedict; O'Brien, Stephen Journal: GigaScience Issue: Volume 9:Issue 6(2020) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Matching phenotypes to whole genomes: Lessons learned from four iterations of the personal genome project community challenges. Issue 9 (19th June 2017) Authors: Cai, Binghuang; Li, Biao; Kiga, Nikki; Thusberg, Janita; Bergquist, Timothy; Chen, Yun‐Ching; Niknafs, Noushin; Carter, Hannah; Tokheim, Collin; Beleva‐Guthrie, Violeta; Douville, Christopher; Bhattacharya, Rohit; Yeo, Hui Ting Grace; Fan, Jean; Sengupta, Sohini; Kim, Dewey; Cline, Melissa; Turne... Journal: Human mutation Issue: Volume 38:Issue 9(2017) Page Start: 1266 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes. (16th June 2014) Authors: Ezkurdia, Iakes; Juan, David; Rodriguez, Jose Manuel; Frankish, Adam; Diekhans, Mark; Harrow, Jennifer; Vazquez, Jesus; Valencia, Alfonso; Tress, Michael L. Journal: Human molecular genetics Issue: Volume 23:Number 22(2014:Nov. 15) Page Start: 5866 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci. (November 2018) Authors: Lilue, Jingtao; Doran, Anthony; Fiddes, Ian; Abrudan, Monica; Armstrong, Joel; Bennett, Ruth; Chow, William; Collins, Joanna; Collins, Stephan; Czechanski, Anne; Danecek, Petr; Diekhans, Mark; Dolle, Dirk-Dominik; Dunn, Matt; Durbin, Richard; Earl, Dent; Ferguson-Smith, Anne; Flicek, Paul; Flint,... Journal: Nature genetics Issue: Volume 50:Number 11(2018) Page Start: 1574 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. The NIH BD2K center for big data in translational genomics. (14th July 2015) Authors: Paten, Benedict; Diekhans, Mark; Druker, Brian J; Friend, Stephen; Guinney, Justin; Gassner, Nadine; Guttman, Mitchell; James Kent, W; Mantey, Patrick; Margolin, Adam A; Massie, Matt; Novak, Adam M; Nothaft, Frank; Pachter, Lior; Patterson, David; Smuga-Otto, Maciej; Stuart, Joshua M; Van't Veer,... Journal: Journal of the American Medical Informatics Association Issue: Volume 22:Number 6(2015:Nov.) Page Start: 1143 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗