1. ConsRM: collection and large-scale prediction of the evolutionarily conserved RNA methylation sites, with implications for the functional epitranscriptome. Issue 6 (17th May 2021) Authors: Song, Bowen; Chen, Kunqi; Tang, Yujiao; Wei, Zhen; Su, Jionglong; de Magalhães, João Pedro; Rigden, Daniel J; Meng, Jia Journal: Briefings in bioinformatics Issue: Volume 22:Issue 6(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology. Issue Volume 51:Issue D1(2023) (16th November 2022) Authors: Zhang, Yuxin; Jiang, Jie; Ma, Jiongming; Wei, Zhen; Wang, Yue; Song, Bowen; Meng, Jia; Jia, Guifang; de Magalhães, João Pedro; Rigden, Daniel J; Hang, Daiyun; Chen, Kunqi Journal: Nucleic acids research Issue: Volume 51:Issue D1(2023) Page Start: D106 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Geographic encoding of transcripts enabled high-accuracy and isoform-aware deep learning of RNA methylation. Issue 18 (26th September 2022) Authors: Huang, Daiyun; Chen, Kunqi; Song, Bowen; Wei, Zhen; Su, Jionglong; Coenen, Frans; de Magalhães, João Pedro; Rigden, Daniel J; Meng, Jia Journal: Nucleic acids research Issue: Volume 50:Issue 18(2022) Page Start: 10290 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. M5C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome. Issue Volume 50:Issue D1(2022) (19th November 2021) Authors: Ma, Jiongming; Song, Bowen; Wei, Zhen; Huang, Daiyun; Zhang, Yuxin; Su, Jionglong; de Magalhães, João Pedro; Rigden, Daniel J; Meng, Jia; Chen, Kunqi Journal: Nucleic acids research Issue: Volume 50:Issue D1(2022) Page Start: D196 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. M6A-Atlas: a comprehensive knowledgebase for unraveling the N6-methyladenosine (m6A) epitranscriptome. Issue Volume 49:Issue D1(2021) (21st August 2020) Authors: Tang, Yujiao; Chen, Kunqi; Song, Bowen; Ma, Jiongming; Wu, Xiangyu; Xu, Qingru; Wei, Zhen; Su, Jionglong; Liu, Gang; Rong, Rong; Lu, Zhiliang; de Magalhães, João Pedro; Rigden, Daniel J; Meng, Jia Journal: Nucleic acids research Issue: Volume 49:Issue D1(2021) Page Start: D134 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. Predict Epitranscriptome Targets and Regulatory Functions of N6-Methyladenosine (m6A) Writers and Erasers. (September 2019) Authors: Song, Yiyou; Xu, Qingru; Wei, Zhen; Zhen, Di; Su, Jionglong; Chen, Kunqi; Meng, Jia Journal: Evolutionary bioinformatics online Issue: Volume 15(2019) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Prediction of RNA Methylation Status From Gene Expression Data Using Classification and Regression Methods. (April 2020) Authors: Xue, Hao; Wei, Zhen; Chen, Kunqi; Tang, Yujiao; Wu, Xiangyu; Su, Jionglong; Meng, Jia Journal: Evolutionary bioinformatics online Issue: Volume 16(2020) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. PSI-MOUSE: Predicting Mouse Pseudouridine Sites From Sequence and Genome-Derived Features. (June 2020) Authors: Song, Bowen; Chen, Kunqi; Tang, Yujiao; Ma, Jialin; Meng, Jia; Wei, Zhen Journal: Evolutionary bioinformatics online Issue: Volume 16(2020) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. RMDisease V2.0: an updated database of genetic variants that affect RNA modifications with disease and trait implication. Issue Volume 51:Issue D1(2023) (5th September 2022) Authors: Song, Bowen; Wang, Xuan; Liang, Zhanmin; Ma, Jiongming; Huang, Daiyun; Wang, Yue; de Magalhães, João Pedro; Rigden, Daniel J; Meng, Jia; Liu, Gang; Chen, Kunqi; Wei, Zhen Journal: Nucleic acids research Issue: Volume 51:Issue D1(2023) Page Start: D1388 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis. Issue Volume 49:Issue D1(2021) (3rd October 2020) Authors: Chen, Kunqi; Song, Bowen; Tang, Yujiao; Wei, Zhen; Xu, Qingru; Su, Jionglong; de Magalhães, João Pedro; Rigden, Daniel J; Meng, Jia Journal: Nucleic acids research Issue: Volume 49:Issue D1(2021) Page Start: D1396 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗