1. BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database. (6th January 2021) Authors: Brůna, Tomáš; Hoff, Katharina J; Lomsadze, Alexandre; Stanke, Mario; Borodovsky, Mark Journal: NAR genomics and bioinformatics Issue: Volume 3:issue 1(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. Dynamic systems models : new methods of parameter and state estimation /: new methods of parameter and state estimation. (2016) Authors: Boguslavskiĭ, I. A (Iosif Arkadʹevich) Editors: Borodovsky, Mark Record Type: Book Extent: 1 online resource (xx, 201 pages) View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Frameshift detection in prokaryotic genomic sequences. (29th July 2009) Authors: Kislyuk, Andrey; Lomsadze, Alexandre; Lapidus, Alla L.; Borodovsky, Mark Journal: International journal of bioinformatics research and applications Issue: Volume 5:Number 4(2009) Page Start: 458 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. Gene Identification in Prokaryotic Genomes, Phages, Metagenomes, and EST Sequences with GeneMarkS Suite. Issue 1 (6th February 2014) Authors: Borodovsky, Mark; Lomsadze, Alex Editors: Coico, Richard; McBride, Alison; Quarles, John M.; Stevenson, Brian; Taylor, Ronald K. Journal: Current protocols in microbiology Issue: Volume 32:Issue 1(2014) Page Start: 1E.7.1 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins. Issue 2 (13th May 2020) Authors: Brůna, Tomáš; Lomsadze, Alexandre; Borodovsky, Mark Journal: NAR genomics and bioinformatics Issue: Volume 2:Issue 2(2020) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. GeneMark-HM: improving gene prediction in DNA sequences of human microbiome. (26th May 2021) Authors: Lomsadze, Alexandre; Bonny, Christophe; Strozzi, Francesco; Borodovsky, Mark Journal: NAR genomics and bioinformatics Issue: Volume 3:issue 2(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Identification of protein coding regions in RNA transcripts. Issue 12 (13th April 2015) Authors: Tang, Shiyuyun; Lomsadze, Alexandre; Borodovsky, Mark Journal: Nucleic acids research Issue: Volume 43:Issue 12(2015) Page Start: e78 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Multiple testing in large-scale contingency tables: inferring patterns of pair-wise amino acid association in β-sheets. (10th May 2006) Authors: Kim, Seoung Bum; Tsui, Kwok-Leung; Borodovsky, Mark Journal: International journal of bioinformatics research and applications Issue: Volume 2:Number 2(2006) Page Start: 193 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. NCBI prokaryotic genome annotation pipeline. Issue 14 (24th June 2016) Authors: Tatusova, Tatiana; DiCuccio, Michael; Badretdin, Azat; Chetvernin, Vyacheslav; Nawrocki, Eric P.; Zaslavsky, Leonid; Lomsadze, Alexandre; Pruitt, Kim D.; Borodovsky, Mark; Ostell, James Journal: Nucleic acids research Issue: Volume 44:Issue 14(2016) Page Start: 6614 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools. (24th April 2018) Authors: Antonov, Ivan V; Mazurov, Evgeny; Borodovsky, Mark; Medvedeva, Yulia A Journal: Briefings in bioinformatics Issue: Volume 20:Number 2(2019) Page Start: 551 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗