1. Analysis of time-series regulatory networks. Issue 21 (June 2020) Authors: Ding, Jun; Bar-Joseph, Ziv Journal: Current opinion in systems biology Issue: Issue 21(2020) Page Start: 16 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
2. A web server for comparative analysis of single-cell RNA-seq data. Issue 1 (December 2018) Authors: Alavi, Amir; Ruffalo, Matthew; Parvangada, Aiyappa; Huang, Zhilin; Bar-Joseph, Ziv Journal: Nature communications Issue: Volume 9:Issue 1(2018) Page Start: 1 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
3. Cell lineage inference from SNP and scRNA-Seq data. Issue 10 (1st March 2019) Authors: Ding, Jun; Lin, Chieh; Bar-Joseph, Ziv Journal: Nucleic acids research Issue: Volume 47:Issue 10(2019) Page Start: e56 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
4. Deep learning of gene relationships from single cell time-course expression data. Issue 5 (20th April 2021) Authors: Yuan, Ye; Bar-Joseph, Ziv Journal: Briefings in bioinformatics Issue: Volume 22:Issue 5(2021) Page Start: Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
5. Hercules: a profile HMM-based hybrid error correction algorithm for long reads. Issue 21 (16th August 2018) Authors: Firtina, Can; Bar-Joseph, Ziv; Alkan, Can; Cicek, A Ercument Journal: Nucleic acids research Issue: Volume 46:Issue 21(2018) Page Start: e125 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
6. Network Design and the Brain. Issue 1 (January 2018) Authors: Navlakha, Saket; Bar-Joseph, Ziv; Barth, Alison L. Journal: Trends in cognitive sciences Issue: Volume 22:Issue 1(2018) Page Start: 64 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
7. Special issue focused on regulatory genomics. Issue 24 (December 2020) Authors: Bar-Joseph, Ziv; Simon, Itamar Journal: Current opinion in systems biology Issue: Issue 24(2020) Page Start: 153 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
8. Temporal transcriptional response to latency reversing agents identifies specific factors regulating HIV-1 viral transcriptional switch. Issue 1 (December 2015) Authors: Venkatachari, Narasimhan; Zerbato, Jennifer; Jain, Siddhartha; Mancini, Allison; Chattopadhyay, Ansuman; Sluis-Cremer, Nicolas; Bar-Joseph, Ziv; Ayyavoo, Velpandi Journal: Retrovirology Issue: Volume 12:Issue 1(2015) Page Start: 1 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
9. Using neural networks for reducing the dimensions of single-cell RNA-Seq data. Issue 17 (29th September 2017) Authors: Lin, Chieh; Jain, Siddhartha; Kim, Hannah; Bar-Joseph, Ziv Journal: Nucleic acids research Issue: Volume 45:Issue 17(2017) Page Start: e156 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗
10. Using single cell atlas data to reconstruct regulatory networks. Issue 7 (10th February 2023) Authors: Song, Qi; Ruffalo, Matthew; Bar-Joseph, Ziv Journal: Nucleic acids research Issue: Volume 51:Issue 7(2023) Page Start: e38 Record Type: Journal Article View Content: Available online (eLD content is only available in our Reading Rooms) ↗