A deep supervised cross-attention strategy for ischemic stroke segmentation in MRI studies. (1st May 2023)

• Record Type: Journal Article
• Authors: Gómez, Santiago; Mantilla, Daniel; Rangel, Edgar; Ortiz, Andrés; D Vera, Daniela; Martínez, Fabio
• Is Part Of: Biomedical physics & engineering express. Volume 9:Number 3(2023)
• Publication Date: 2023-05-01
• Subjects: attention mechanisms -- medical image segmentation -- stroke -- imbalanced problems; Medical physics -- Periodicals; Biophysics -- Periodicals; Biomedical engineering -- Periodicals; Medical sciences -- Periodicals; 610.153
• DOI: 10.1088/2057-1976/acc853
• Languages: English
• ISSNs: 2057-1976

Abstract

Abstract: The key component of stroke diagnosis is the localization and delineation of brain lesions, especially from MRI studies. Nonetheless, this manual delineation is time-consuming and biased by expert opinion. The main purpose of this study is to introduce an autoencoder architecture that effectively integrates cross-attention mechanisms, together with hierarchical deep supervision to delineate lesions under scenarios of remarked unbalance tissue classes, challenging geometry of the shape, and a variable textural representation. This work introduces a cross-attention deep autoencoder that focuses on the lesion shape through a set of convolutional saliency maps, forcing skip connections to preserve the morphology of affected tissue. Moreover, a deep supervision training scheme was herein adapted to induce the learning of hierarchical lesion details. Besides, a special weighted loss function remarks lesion tissue, alleviating the negative impact of class imbalance. The proposed approach was validated on the public ISLES2017 dataset outperforming state-of-the-art results, achieving a dice score of 0.36 and a precision of 0.42. Deeply supervised cross-attention autoencoders, trained to pay more attention to lesion tissue, are better at estimating ischemic lesions in MRI studies. The best architectural configuration was achieved by integrating ADC, TTP and Tmax sequences. The contribution of deeply supervised cross-attention autoencoders allows better support the discrimination between healthy and lesion regions, which in consequence results in favorable prognosis and follow-up of patients.