Spike sorting algorithms and their efficient hardware implementation: a comprehensive survey. (1st April 2023)

• Record Type: Journal Article
• Authors: Zhang, Tim; Rahimi Azghadi, Mostafa; Lammie, Corey; Amirsoleimani, Amirali; Genov, Roman
• Is Part Of: Journal of neural engineering. Volume 20:Number 2(2023)
• Publication Date: 2023-04-01
• Subjects: spike sorting -- hardware -- machine learning -- neuromorphic engineering; Neurosciences -- Periodicals; Biomedical engineering -- Periodicals; 612.8
• DOI: 10.1088/1741-2552/acc7cc
• Languages: English
• ISSNs: 1741-2560

Abstract

Abstract: Objective . Spike sorting is a set of techniques used to analyze extracellular neural recordings, attributing individual spikes to individual neurons. This field has gained significant interest in neuroscience due to advances in implantable microelectrode arrays, capable of recording thousands of neurons simultaneously. High-density electrodes, combined with efficient and accurate spike sorting systems, are essential for various applications, including brain machine interfaces (BMIs), experimental neural prosthetics, real-time neurological disorder monitoring, and neuroscience research. However, given the resource constraints of modern applications, relying solely on algorithmic innovation is not enough. Instead, a co-optimization approach that combines hardware and spike sorting algorithms must be taken to develop neural recording systems suitable for resource-constrained environments, such as wearable devices and BMIs. This co-design requires careful consideration when selecting appropriate spike-sorting algorithms that match specific hardware and use cases. Approach . We investigated the recent literature on spike sorting, both in terms of hardware advancements and algorithms innovations. Moreover, we dedicated special attention to identifying suitable algorithm-hardware combinations, and their respective real-world applicabilities. Main results . In this review, we first examined the current progress in algorithms, and described the recent departure from the conventional '3-step' algorithms in favor of more advanced template matching or machine-learning-based techniques. Next, we explored innovative hardware options, including application-specific integrated circuits, field-programmable gate arrays, and in-memory computing devices (IMCs). Additionally, the challenges and future opportunities for spike sorting are discussed. Significance . This comprehensive review systematically summarizes the latest spike sorting techniques and demonstrates how they enable researchers to overcome traditional obstacles and unlock novel applications. Our goal is for this work to serve as a roadmap for future researchers seeking to identify the most appropriate spike sorting implementations for various experimental settings. By doing so, we aim to facilitate the advancement of this exciting field and promote the development of innovative solutions that drive progress in neural engineering research.