DeepCEST 7 T: Fast and homogeneous mapping of 7 T CEST MRI parameters and their uncertainty quantification. Issue 4 (15th November 2022)

• Record Type: Journal Article
• Authors: Hunger, Leonie; Rajput, Junaid R.; Klein, Kiril; Mennecke, Angelika; Fabian, Moritz S.; Schmidt, Manuel; Glang, Felix; Herz, Kai; Liebig, Patrick; Nagel, Armin M.; Scheffler, Klaus; Dörfler, Arnd; Maier, Andreas; Zaiss, Moritz
• Is Part Of: Magnetic resonance in medicine. Volume 89:Issue 4(2023)
• Page Start: 1543
• Page End: 1556
• Publication Date: 2022-11-15
• Subjects: amide -- CEST -- deep learning -- neural networks -- rNOE -- uncertainty quantification; Nuclear magnetic resonance -- Periodicals; Electron paramagnetic resonance -- Periodicals; 616.07548
• DOI: 10.1002/mrm.29520
• Languages: English
• ISSNs: 0740-3194

Abstract

Abstract : Purpose: In this work, we investigated the ability of neural networks to rapidly and robustly predict Lorentzian parameters of multi‐pool CEST MRI spectra at 7 T with corresponding uncertainty maps to make them quickly and easily available for routine clinical use. Methods: We developed a deepCEST 7 T approach that generates CEST contrasts from just 1 scan with robustness against B1 inhomogeneities. The input data for a neural feed‐forward network consisted of 7 T in vivo uncorrected Z ‐spectra of a single B1 level, and a B1 map. The 7 T raw data were acquired using a 3D snapshot gradient echo multiple interleaved mode saturation CEST sequence. These inputs were mapped voxel‐wise to target data consisting of Lorentzian amplitudes generated conventionally by 5‐pool Lorentzian fitting of normalized, denoised, B0 ‐ and B1 ‐corrected Z ‐spectra. The deepCEST network was trained with Gaussian negative log‐likelihood loss, providing an uncertainty quantification in addition to the Lorentzian amplitudes. Results: The deepCEST 7 T network provides fast and accurate prediction of all Lorentzian parameters also when only a single B1 level is used. The prediction was highly accurate with respect to the Lorentzian fit amplitudes, and both healthy tissues and hyperintensities in tumor areas are predicted with a low uncertainty. In corrupted cases, high uncertainty indicated wrong predictions reliably. Conclusion: The proposed deepCEST 7 T approach reduces scan time by 50% to now 6:42 min, but still delivers both B0 ‐ and B1 ‐corrected homogeneous CEST contrasts along with an uncertainty map, which can increase diagnostic confidence. Multiple accurate 7 T CEST contrasts are delivered within seconds.