GA4GH Phenopackets: A Practical Introduction. Issue 1 (25th August 2022)

• Record Type: Journal Article
• Authors: Ladewig, Markus S.; Jacobsen, Julius O. B.; Wagner, Alex H.; Danis, Daniel; El Kassaby, Baha; Gargano, Michael; Groza, Tudor; Baudis, Michael; Steinhaus, Robin; Seelow, Dominik; Bechrakis, Nikolaos E.; Mungall, Christopher J.; Schofield, Paul N.; Elemento, Olivier; Smith, Lindsay; McMurry, Julie A.; Munoz‐Torres, Monica; Haendel, Melissa A.; Robinson, Peter N.
• Is Part Of: Advanced genetics. Volume 4:Issue 1(2023)
• Page Start: n/a
• Page End: n/a
• Publication Date: 2022-08-25
• Subjects: deep phenotyping -- FAIR data -- Global Alliance for Genomics and Health -- Human Phenotype Ontology -- Phenopacket Schema; Genetics -- Periodicals; Genomics -- Periodicals; Genomics; Genetics; Genetics; Genomics; Electronic journals; Periodicals; 576.5
• DOI: 10.1002/ggn2.202200016
• Languages: English
• ISSNs: 2641-6573

Abstract

Abstract: The Global Alliance for Genomics and Health (GA4GH) is developing a suite of coordinated standards for genomics for healthcare. The Phenopacket is a new GA4GH standard for sharing disease and phenotype information that characterizes an individual person, linking that individual to detailed phenotypic descriptions, genetic information, diagnoses, and treatments. A detailed example is presented that illustrates how to use the schema to represent the clinical course of a patient with retinoblastoma, including demographic information, the clinical diagnosis, phenotypic features and clinical measurements, an examination of the extirpated tumor, therapies, and the results of genomic analysis. The Phenopacket Schema, together with other GA4GH data and technical standards, will enable data exchange and provide a foundation for the computational analysis of disease and phenotype information to improve our ability to diagnose and conduct research on all types of disorders, including cancer and rare diseases. Abstract : The Global Alliance for Genomics and Health (GA4GH) is developing a suite of standards to enable genomic and related‐health data sharing. The Phenopacket is a new GA4GH standard for sharing disease and phenotype information that characterizes an individual person or biosample, linking that individual to detailed phenotypic descriptions, genetic information, diagnoses, and treatments. Here, a detailed example is presented.