Constraining the composition and quantity of organic matter used by abundant marine Thaumarchaeota. (26th December 2022)

• Record Type: Journal Article
• Authors: Parada, Alma E.; Mayali, Xavier; Weber, Peter K.; Wollard, Jessica; Santoro, Alyson E.; Fuhrman, Jed A.; Pett‐Ridge, Jennifer; Dekas, Anne E.
• Is Part Of: Environmental microbiology. Volume 25:Number 3(2023)
• Page Start: 689
• Page End: 704
• Publication Date: 2022-12-26
• Subjects: Microbial ecology -- Periodicals; Environmental Microbiology -- Periodicals; 579.17
• DOI: 10.1111/1462-2920.16299
• Languages: English
• ISSNs: 1462-2912

Abstract

Abstract: Marine Group I (MGI) Thaumarchaeota were originally described as chemoautotrophic nitrifiers, but molecular and isotopic evidence suggests heterotrophic and/or mixotrophic capabilities. Here, we investigated the quantity and composition of organic matter assimilated by individual, uncultured MGI cells from the Pacific Ocean to constrain their potential for mixotrophy and heterotrophy. We observed that most MGI cells did not assimilate carbon from any organic substrate provided (glucose, pyruvate, oxaloacetate, protein, urea, and amino acids). The minority of MGI cells that did assimilate it did so exclusively from nitrogenous substrates (urea, 15% of MGI and amino acids, 36% of MGI), and only as an auxiliary carbon source (<20% of that subset's total cellular carbon was derived from those substrates). At the population level, MGI assimilation of organic carbon comprised just 0.5%–11% of total biomass carbon. We observed extensive assimilation of inorganic carbon and urea‐ and amino acid‐derived nitrogen (equal to that from ammonium), consistent with metagenomic and metatranscriptomic analyses performed here and previously showing a widespread potential for MGI to perform autotrophy and transport and degrade organic nitrogen. Our results constrain the quantity and composition of organic matter used by MGI and suggest they use it primarily to meet nitrogen demands for anabolism and nitrification.