Compilation of real‐time PCR conditions toward the standardization of environmental DNA methods. Issue 3 (21st March 2021)

• Record Type: Journal Article
• Authors: Doi, Hideyuki; Minamoto, Toshifumi; Takahara, Teruhiko; Tsuji, Satsuki; Uchii, Kimiko; Yamamoto, Satoshi; Katano, Izumi; Yamanaka, Hiroki
• Is Part Of: Ecological research. Volume 36:Issue 3(2021)
• Page Start: 379
• Page End: 388
• Publication Date: 2021-03-21
• Subjects: abundance -- eDNA -- PCR inhibitor -- qPCR -- species distribution; Ecology -- Periodicals; Ecology -- Japan -- Periodicals; Écologie; Japon; Ecology; Japan; Ressource Internet (Descripteur de forme); Périodique électronique (Descripteur de forme); Periodicals; 577.05
• DOI: 10.1111/1440-1703.12217
• Languages: English
• ISSNs: 0912-3814

Abstract

Abstract: The recent development of the environmental DNA (eDNA) technique has dramatically facilitated investigations of the distribution and abundance of macroorganisms in the natural environment. Various real‐time polymerase chain reaction (PCR)‐based methods have been proposed for the detection and quantification of eDNA by independent researchers or groups. Although several eDNA reviews have outlined the critical requirements for experimental processes and provided guidelines for best practice, clear standardization of eDNA protocols is lacking. Here, we collected the PCR conditions of previous eDNA studies using real‐time PCR ( n = 190), that is, the volume of the DNA template, PCR cycles, number of PCR replicates and PCR inhibition tests. Then, we synthesized the current development of real‐time PCR techniques for eDNA studies. Our synthesis has identified the critical issues that need to be addressed to design standardized protocols for eDNA monitoring that will enable broader uptake of eDNA technology. Abstract : Framework for species detection and DNA estimation by species‐specific primers using real‐time qPCR.