An Atrous Convolved Hybrid Seg-Net Model with residual and attention mechanism for gland detection and segmentation in histopathological images. (March 2023)

• Record Type: Journal Article
• Authors: Dabass, Manju; Dabass, Jyoti
• Is Part Of: Computers in biology and medicine. Volume 155(2023)
• Publication Date: 2023-03
• Subjects: Deep learning -- Automated gland segmentation: colon histopathology images -- Residual learning -- Attention mechanism -- Multi- scale features; Medicine -- Data processing -- Periodicals; Biology -- Data processing -- Periodicals; 610.285
• DOI: 10.1016/j.compbiomed.2023.106690
• Languages: English
• ISSNs: 0010-4825

Abstract

Abstract: Purpose: A clinically compatible computerized segmentation model is presented here that aspires to supply clinical gland informative details by seizing every small and intricate variation in medical images, integrate second opinions, and reduce human errors. Approach: It comprises of enhanced learning capability that extracts denser multi-scale gland-specific features, recover semantic gap during concatenation, and effectively handle resolution-degradation and vanishing gradient problems. It is having three proposed modules namely Atrous Convolved Residual Learning Module in the encoder as well as decoder, Residual Attention Module in the skip connection paths, and Atrous Convolved Transitional Module as the transitional and output layer. Also, pre-processing techniques like patch-sampling, stain-normalization, augmentation, etc. are employed to develop its generalization capability. To verify its robustness and invigorate network invariance against digital variability, extensive experiments are carried out employing three different public datasets i.e., GlaS (Gland Segmentation Challenge), CRAG (Colorectal Adenocarcinoma Gland) and LC-25000 (Lung Colon-25000) dataset and a private HosC (Hospital Colon) dataset. Results: The presented model accomplished combative gland detection outcomes having F1-score (GlaS(Test A(0.957), Test B(0.926)), CRAG(0.935), LC 25000(0.922), HosC(0.963)); and gland segmentation results having Object-Dice Index (GlaS(Test A(0.961), Test B(0.933)), CRAG(0.961), LC-25000(0.940), HosC(0.929)), and Object-Hausdorff Distance (GlaS(Test A(21.77) and Test B(69.74)), CRAG(87.63), LC-25000(95.85), HosC(83.29)). In addition, validation score (GlaS (Test A(0.945), Test B(0.937)), CRAG(0.934), LC-25000(0.911), HosC(0.928)) supplied by the proficient pathologists is integrated for the end segmentation results to corroborate the applicability and appropriateness for assistance at the clinical level applications. Conclusion: The proposed system will assist pathologists in devising precise diagnoses by offering a referential perspective during morphology assessment of colon histopathology images. Graphical abstract: Image 1 Highlights: A Seg-Net Model with Atrous Convolved Residual Learning Modules for enhanced learning capability. Residual-Attention units recover semantic gaps and pre-processing step improves its robustness. Extensive experiments are performed on Four Diverse datasets including a private dataset. Comparison with existing state-of-art techniques is done to show its significance and superiority. Output results are validated by multiple pathologists in form of validation score.