GNIFdb: a neoantigen intrinsic feature database for glioma. (12th February 2022)

• Record Type: Journal Article
• Authors: Li, Wendong; Sun, Ting; Li, Muyang; He, Yufei; Li, Lin; Wang, Lu; Wang, Haoyu; Li, Jing; Wen, Hao; Liu, Yong; Chen, Yifan; Fan, Yubo; Xin, Beibei; Zhang, Jing
• Is Part Of: Database. Volume 2022(2022)
• Publication Date: 2022-02-12
• Subjects: Biology -- Databases -- Periodicals; Bioinformatics -- Periodicals; 570.285
• DOI: 10.1093/database/baac004
• Languages: English
• ISSNs: 1758-0463

Abstract

Abstract: Abstract: Neoantigens are mutation-containing immunogenic peptides from tumor cells. Neoantigen intrinsic features are neoantigens' sequence-associated features characterized by different amino acid descriptors and physical–chemical properties, which have a crucial function in prioritization of neoantigens with immunogenic potentials and predicting patients with better survival. Different intrinsic features might have functions to varying degrees in evaluating neoantigens' potentials of immunogenicity. Identification and comparison of intrinsic features among neoantigens are particularly important for developing neoantigen-based personalized immunotherapy. However, there is still no public repository to host the intrinsic features of neoantigens. Therefore, we developed GNIFdb, a glioma neoantigen intrinsic feature database specifically designed for hosting, exploring and visualizing neoantigen and intrinsic features. The database provides a comprehensive repository of computationally predicted Human leukocyte antigen class I (HLA-I) restricted neoantigens and their intrinsic features; a systematic annotation of neoantigens including sequence, neoantigen-associated mutation, gene expression, glioma prognosis, HLA-I subtype and binding affinity between neoantigens and HLA-I; and a genome browser to visualize them in an interactive manner. It represents a valuable resource for the neoantigen research community and is publicly available at http://www.oncoimmunobank.cn/index.php . Database URL: http://www.oncoimmunobank.cn/index.php