LAMP2: a major update of the database linking antimicrobial peptides. (25th August 2020)

• Record Type: Journal Article
• Authors: Ye, Guizi; Wu, Hongyu; Huang, Jinjiang; Wang, Wei; Ge, Kuikui; Li, Guodong; Zhong, Jiang; Huang, Qingshan
• Is Part Of: Database. Volume 2020(2020)
• Publication Date: 2020-08-25
• Subjects: antimicrobial peptides -- database -- LAMP; Biology -- Databases -- Periodicals; Bioinformatics -- Periodicals; 570.285
• DOI: 10.1093/database/baaa061
• Languages: English
• ISSNs: 1758-0463

Abstract

Abstract: Antimicrobial peptides (AMPs) have been regarded as a potential weapon to fight against drug-resistant bacteria, which is threating the globe. Thus, more and more AMPs had been designed or identified. There is a need to integrate them into a platform for researchers to facilitate investigation and analyze existing AMPs. The AMP database has become an important tool for the discovery and transformation of AMPs as agents. A database linking antimicrobial peptides (LAMPs), launched in 2013, serves as a comprehensive tool to supply exhaustive information of AMP on a single platform. LAMP2, an updated version of LAMP, holds 23 253 unique AMP sequences and expands to link 16 public AMP databases. In the current version, there are more than 50% (12 236) sequences only linking a single database and more than 45% of AMPs linking two or more database links. Additionally, updated categories based on primary structure, collection, composition, source and function have been integrated into LAMP2. Peptides in LAMP2 have been integrated in 8 major functional classes and 38 functional activities. More than 89% (20 909) of the peptides are experimentally validated peptides. A total of 1924 references were extracted and regarded as the evidence for supporting AMP activity and cytotoxicity. The updated version will be helpful to the scientific community.