Linking biosynthetic and chemical space to accelerate microbial secondary metabolite discovery. Issue 13 (28th June 2019)

• Record Type: Journal Article
• Authors: Soldatou, Sylvia; Eldjarn, Grimur Hjorleifsson; Huerta-Uribe, Alejandro; Rogers, Simon; Duncan, Katherine R
• Is Part Of: FEMS microbiology letters. Volume 366:Issue 13(2019)
• Publication Date: 2019-06-28
• Subjects: secondary metabolites -- specialised metabolites -- biosynthetic gene clusters -- genome mining -- comparative metabolomics; Microbiology -- Periodicals; 579
• DOI: 10.1093/femsle/fnz142
• Languages: English
• ISSNs: 0378-1097

Abstract

ABSTRACT: Secondary metabolites can be viewed as a chemical language, facilitating communication between microorganisms. From an ecological point of view, this metabolite exchange is in constant flux due to evolutionary and environmental pressures. From a biomedical perspective, the chemistry is unsurpassed for its antibiotic properties. Genome sequencing of microorganisms has revealed a large reservoir of Biosynthetic Gene Clusters (BGCs); however, linking these to the secondary metabolites they encode is currently a major bottleneck to chemical discovery. This linking of genes to metabolites with experimental validation will aid the elicitation of silent or cryptic (not expressed under normal laboratory conditions) BGCs. As a result, this will accelerate chemical dereplication, our understanding of gene transcription and provide a comprehensive resource for synthetic biology. This will ultimately provide an improved understanding of both the biosynthetic and chemical space. In recent years, integrating these complex metabolomic and genomic data sets has been achieved using a spectrum of manual and automated approaches. In this review, we cover examples of these approaches, while addressing current challenges and future directions in linking these data sets. Abstract : This review covers advances in methods used to link microbial genes to the chemistry they encode