PvP01-DB: computational structural and functional characterization of soluble proteome of PvP01 strain of Plasmodium vivax. (16th June 2020)

• Record Type: Journal Article
• Authors: Singh, Ankita; Kaushik, Rahul; Chaurasia, Dheeraj Kumar; Singh, Manpreet; Jayaram, B
• Is Part Of: Database. Volume 2020(2020)
• Publication Date: 2020-06-16
• Subjects: Malarial Infection -- Plasmodium vivax -- Computational Protein Databank -- Functional Characterization; Protein Structure Prediction -- Malarial Protein Targets; Biology -- Databases -- Periodicals; Bioinformatics -- Periodicals; 570.285
• DOI: 10.1093/database/baaa036
• Languages: English
• ISSNs: 1758-0463

Abstract

Abstract: Despite Plasmodium vivax being the main offender in the majority of malarial infections, very little information is available about its adaptation and development in humans. Its capability for activating relapsing infections through its dormant liver stage and resistance to antimalarial drugs makes it as one of the major challenges in eradicating malaria. Noting the immediate necessity for the availability of a comprehensive and reliable structural and functional repository for P. vivax proteome, here we developed a web resource for the new reference genome, PvP01, furnishing information on sequence, structure, functions, active sites and metabolic pathways compiled and predicted using some of the state-of-the-art methods in respective fields. The PvP01 web resource comprises organized data on the soluble proteome consisting of 3664 proteins in blood and liver stages of malarial cycle. The current public resources represent only 163 proteins of soluble proteome of PvP01, with complete information about their molecular function, biological process and cellular components. Also, only 46 proteins of P. vivax have experimentally determined structures. In this milieu of extreme scarcity of structural and functional information, PvP01 web resource offers meticulously validated structures of 3664 soluble proteins. The sequence and structure-based functional characterization led to a quantum leap from 163 proteins available presently to whole soluble proteome offered through PvP01 web resource. We believe PvP01 web resource will serve the researchers in identifying novel protein drug targets and in accelerating the development of structure-based new drug candidates to combat malaria. Database Availability: http://www.scfbio-iitd.res.in/PvP01