A color-based competition assay for studying bacterial stress responses in Micrococcus luteus. Issue 5 (13th March 2019)

• Record Type: Journal Article
• Authors: Havis, Spencer; Rangel, Jonathan; Mali, Sujina; Bodunrin, Abiodun; Housammy, Zina; Zimmerer, Rene; Murphy, Jesse; Widger, William R; Bark, Steven J
• Is Part Of: FEMS microbiology letters. Volume 366:Issue 5(2019)
• Publication Date: 2019-03-13
• Subjects: latency -- competition assay -- stress response -- survival -- knockout -- antibiotic resistance; Microbiology -- Periodicals; 579
• DOI: 10.1093/femsle/fnz054
• Languages: English
• ISSNs: 0378-1097

Abstract

ABSTRACT: Competition assays measure differences between populations of bacteria after stress adaptation, populations of different bacteria and mutations in antibiotic resistance genes. We have developed a competition-based assay to evaluate if genes upregulated under starvation are important for bacterial survival. Stress responses are critical for survival in non-pathogenic and pathogenic bacteria alike including Mycobacterium tuberculosis, Enterococcus fecaelis, Escherichia coli and Staphylococcus aureus . Unfortunately, most stress-survival proteins are poorly understood because suitable model bacteria and techniques are limited. To address this problem, we have engineered Micrococcus luteus NCTC 2665 ( M. luteus ) for competition assays by inactivating the sarcinaxanthin biosynthesis gene crtE (ΔcrtE), changing M. luteus colonies from yellow to white. This change allows easy identification in mixed cultures. The crtE knockout is relatively neutral for growth in complex and minimal acetate media and shows a measured fitness of one in competition with yellow wild-type bacteria. The ΔcrtE M. luteus competition assay identified a competition defect in a M. luteus strain when a specific universal stress protein was inactivated, suggesting a negative survival phenotype for this protein. We anticipate this competition assay can identify defects in other gene knockouts and mutational studies in M. luteus and will enhance our understanding of bacterial survival mechanisms. Abstract : A color-based competition assay using M. luteus engineered at the crtE sarcinaxanthin biosynthesis gene enables identification of important stress-response genes in a Gram-positive bacterium.