Bridging clinical care and research in Ontario, Canada: Maximizing diagnoses from reanalysis of clinical exome sequencing data. Issue 3 (29th November 2022)

• Record Type: Journal Article
• Authors: Hartley, Taila; Soubry, Élisabeth; Acker, Meryl; Osmond, Matthew; Couse, Madeline; Gillespie, Meredith K.; Ito, Yoko; Marshall, Aren E.; Lemire, Gabrielle; Huang, Lijia; Chisholm, Caitlin; Eaton, Alison J.; Price, E. Magda; Dowling, James J.; Ramani, Arun K.; Mendoza‐Londono, Roberto; Costain, Gregory; Axford, Michelle M.; Szuto, Anna; McNiven, Vanda; Damseh, Nadirah; Jobling, Rebekah; de Kock, Leanne; Mojarad, Bahareh A.; Young, Ted; Shao, Zhuo; Hayeems, Robin Z.; Graham, Ian D.; Tarnopolsky, Mark; Brady, Lauren; Armour, Christine M.; Geraghty, Michael; Richer, Julie; Sawyer, Sarah; Lines, Matthew; Mercimek‐Andrews, Saadet; Carter, Melissa T.; Graham, Gail; Kannu, Peter; Lazier, Joanna; Li, Chumei; Aul, Ritu B.; Balci, Tugce B.; Dlamini, Nomazulu; Badalato, Lauren; Guerin, Andrea; Walia, Jagdeep; Chitayat, David; Cohn, Ronald; Faghfoury, Hanna; Forster‐Gibson, Cynthia; Gonorazky, Hernan; Grunebaum, Eyal; Inbar‐Feigenberg, Michal; Karp, Natalya; Morel, Chantal; Rusnak, Alison; Sondheimer, Neal; Warman‐Chardon, Jodi; Bhola, Priya T.; Bourque, Danielle K.; Chacon, Inara J.; Chad, Lauren; Chakraborty, Pranesh; Chong, Karen; Doja, Asif; Goh, Elaine Suk‐Ying; Saleh, Maha; Potter, Beth K.; Marshall, Christian R.; Dyment, David A.; Kernohan, Kristin; Boycott, Kym M.;
• Is Part Of: Clinical genetics. Volume 103:Issue 3(2023)
• Page Start: 288
• Page End: 300
• Publication Date: 2022-11-29
• Subjects: exome sequencing -- healthcare system -- matchmaking -- rare disease -- reanalysis; Medical genetics -- Periodicals; 616.0420
• DOI: 10.1111/cge.14262
• Languages: English
• ISSNs: 0009-9163

Abstract

Abstract: We examined the utility of clinical and research processes in the reanalysis of publicly‐funded clinical exome sequencing data in Ontario, Canada. In partnership with eight sites, we recruited 287 families with suspected rare genetic diseases tested between 2014 and 2020. Data from seven laboratories was reanalyzed with the referring clinicians. Reanalysis of clinically relevant genes identified diagnoses in 4% (13/287); four were missed by clinical testing. Translational research methods, including analysis of novel candidate genes, identified candidates in 21% (61/287). Of these, 24 families have additional evidence through data sharing to support likely diagnoses (8% of cohort). This study indicates few diagnoses are missed by clinical laboratories, the incremental gain from reanalysis of clinically‐relevant genes is modest, and the highest yield comes from validation of novel disease‐gene associations. Future implementation of translational research methods, including continued reporting of compelling genes of uncertain significance by clinical laboratories, should be considered to maximize diagnoses. Abstract : Reanalysis of 287 nondiagnostic clinical exomes from Ontario, Canada revealed few missed diagnoses by the clinical laboratories and the incremental gain from reanalysis of clinically‐relevant genes is modest. The highest yield came from translational research methods to validate novel disease‐gene associations.