A new ferroptosis-related gene model for prognostic prediction of papillary thyroid carcinoma. Issue 1 (1st January 2021)

• Record Type: Journal Article
• Authors: Qian, Xiaoyu; Tang, Jian; Li, Lin; Chen, Ziqiang; Chen, Liang; Chu, Yongquan
• Is Part Of: Bioengineered. Volume 12:Issue 1(2021)
• Page Start: 2341
• Page End: 2351
• Publication Date: 2021-01-01
• Subjects: Ferroptosis -- prognosis -- papillary thyroid carcinoma -- overall survival -- gene model; Biomedical engineering -- Periodicals; Biotechnology -- Periodicals; Microbiology -- Periodicals; 660.6
• DOI: 10.1080/21655979.2021.1935400
• Languages: English
• ISSNs: 2165-5987

Abstract

ABSTRACT: Papillary thyroid carcinoma (PTC) is a highly heterogeneous malignancy with diverse prognoses. Ferroptosis is a new type of cell death dependent on iron. Nevertheless, the predictive ability of ferroptosis-related genes for PTC is unclear. Based on the mRNA expression information from The Cancer Genome Atlas, we compared tumor and normal tissues in terms of the gene expression, for identifying differentially expressed genes (DEGs). Then, the risk score of a 5-gene signature was calculated and a prognostic model was established to test the predictive value of this gene signature by virtue of the LASSO Cox regression. The 5 genes were validated in PTC tissues by RT-qPCR.At last, functional analysis was implemented to investigate the underlying mechanisms. We found a total of 45 ferroptosis-related genes expressed differentially between tumor and normal tissues. 6 DEGs exhibited a significant relevance to the overall survival (OS) ( P < 0.05). We classified patients into group with high risk and group with low risk based on the median risk score of a 5-gene signature. Patients in the group with low risk presented a remarkably higher OS relative to the group with high risk ( P < 0.01). The Cox regression analysis displayed the independent predictive ability of the risk score. The receiver operating characteristic analysis helped to validate the predictive power owned by the gene signature. After validation, the 5 genes were abnormally expressed between PTC and normal tissues. Functional analysis showed two groups had different immune status. A new ferroptosis-related gene signature can predict the outcomes of PTC patients. ABSTRACT: uf0001