Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases. (14th August 2019)
- Record Type:
- Journal Article
- Title:
- Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases. (14th August 2019)
- Main Title:
- Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases
- Authors:
- Priyam, Anurag
Woodcroft, Ben J
Rai, Vivek
Moghul, Ismail
Munagala, Alekhya
Ter, Filip
Chowdhary, Hiten
Pieniak, Iwo
Maynard, Lawrence J
Gibbins, Mark Anthony
Moon, HongKee
Davis-Richardson, Austin
Uludag, Mahmut
Watson-Haigh, Nathan S
Challis, Richard
Nakamura, Hiroyuki
Favreau, Emeline
Gómez, Esteban A
Pluskal, Tomás
Leonard, Guy
Rumpf, Wolfgang
Wurm, Yannick - Abstract:
- Abstract: Comparing newly obtained and previously known nucleotide and amino-acid sequences underpins modern biological research. BLAST is a well-established tool for such comparisons but is challenging to use on new data sets. We combined a user-centric design philosophy with sustainable software development approaches to create Sequenceserver, a tool for running BLAST and visually inspecting BLAST results for biological interpretation. Sequenceserver uses simple algorithms to prevent potential analysis errors and provides flexible text-based and visual outputs to support researcher productivity. Our software can be rapidly installed for use by individuals or on shared servers.
- Is Part Of:
- Molecular biology and evolution. Volume 36:Number 12(2019)
- Journal:
- Molecular biology and evolution
- Issue:
- Volume 36:Number 12(2019)
- Issue Display:
- Volume 36, Issue 12 (2019)
- Year:
- 2019
- Volume:
- 36
- Issue:
- 12
- Issue Sort Value:
- 2019-0036-0012-0000
- Page Start:
- 2922
- Page End:
- 2924
- Publication Date:
- 2019-08-14
- Subjects:
- visualization -- BLAST -- comparative genomics -- sequence analysis
Molecular biology -- Periodicals
Molecular evolution -- Periodicals
Evolution, Molecular -- Periodicals
Molecular Biology -- Periodicals
572.8 - Journal URLs:
- http://mbe.oxfordjournals.org/ ↗
http://www.molbiolevol.org/ ↗
http://ukcatalogue.oup.com/ ↗
http://firstsearch.oclc.org ↗
http://firstsearch.oclc.org/journal=0737-7038;screen=info;ECOIP ↗ - DOI:
- 10.1093/molbev/msz185 ↗
- Languages:
- English
- ISSNs:
- 0737-4038
- Deposit Type:
- Legaldeposit
- View Content:
- Available online (eLD content is only available in our Reading Rooms) ↗
- Physical Locations:
- British Library DSC - 5900.782000
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British Library HMNTS - ELD Digital store - Ingest File:
- 25392.xml