MoBPSweb: A web-based framework to simulate and compare breeding programs. Issue 2 (4th February 2021)

• Record Type: Journal Article
• Authors: Pook, Torsten; Büttgen, Lisa; Ganesan, Amudha; Ha, Ngoc-Thuy; Simianer, Henner
• Editors: de los Campos, G
• Is Part Of: G3. Volume 11:Issue 2(2021)
• Publication Date: 2021-02-04
• Subjects: MoBPS -- breeding -- program -- resource -- management -- simulation -- population -- genetics -- nginx; Genetics -- Research -- Periodicals; Genomics -- Periodicals; Genetics; Genomics; Genes; Genetics -- Research; Genomics; Electronic journals; Periodical; Periodicals; Fulltext; Internet Resources; Periodicals; 572.8
• DOI: 10.1093/g3journal/jkab023
• Languages: English
• ISSNs: 2160-1836

Abstract

Abstract: In this study, we introduce a new web-based simulation framework ("MoBPSweb") that combines a unified language to describe breeding programs with the simulation software MoBPS, standing for "Modular Breeding Program Simulator." Thereby, MoBPSweb provides a flexible environment to log, simulate, evaluate, and compare breeding programs. Inputs can be provided via modules ranging from a Vis.js-based environment for "drawing" the breeding program to a variety of modules to provide phenotype information, economic parameters, and other relevant information. Similarly, results of the simulation study can be extracted and compared to other scenarios via output modules ( e.g., observed phenotypes, the accuracy of breeding value estimation, inbreeding rates), while all simulations and downstream analysis are executed in the highly efficient R-package MoBPS.