Core promoter in TNBC is highly mutated with rich ethnic signature. (28th October 2022)

• Record Type: Journal Article
• Authors: Huang, Teng; Li, Jiaheng; Zhao, Heng; Ngamphiw, Chumpol; Tongsima, Sissades; Kantaputra, Piranit; Kittitharaphan, Wiranpat; Wang, San Ming
• Is Part Of: Briefings in functional genomics. Volume 22:Number 1(2023)
• Page Start: 9
• Page End: 19
• Publication Date: 2022-10-28
• Subjects: core promoter -- RNA-seq -- triple-negative breast cancer -- variation -- exome sequences; Genomics -- Methodology -- Periodicals; Genomics -- Technological innovations -- Periodicals; 572.86072
• DOI: 10.1093/bfgp/elac035
• Languages: English
• ISSNs: 2041-2649

Abstract

Abstract: The core promoter plays an essential role in regulating transcription initiation by controlling the interaction between transcriptional factors and sequence motifs in the core promoter. Although mutation in core promoter sequences is expected to cause abnormal gene expression leading to pathogenic consequences, limited supporting evidence showed the involvement of core promoter mutation in diseases. Our previous study showed that the core promoter is highly polymorphic in worldwide human ethnic populations in reflecting human history and adaptation. Our recent characterization of the core promoter in triple-negative breast cancer (TNBC), a subtype of breast cancer, in a Chinese TNBC cohort revealed the wide presence of core promoter mutation in TNBC. In the current study, we analyzed the core promoter in a Thai TNBC cohort. We also observed rich core promoter mutation in the Thai TNBC patients. We compared the core promoter mutations between Chinese and Thai TNBC cohorts. We observed substantial differences of core promoter mutation in TNBC between the two cohorts, as reflected by the mutation spectrum, mutation-effected gene and functional category, and altered gene expression. Our study confirmed that the core promoter in TNBC is highly mutable, and is highly ethnic-specific.