A Bayesian model for identifying cancer subtypes from paired methylation profiles. Issue 1 (28th December 2022)

• Record Type: Journal Article
• Authors: Fan, Yetian; S Chan, April; Zhu, Jun; Yi Leung, Suet; Fan, Xiaodan
• Is Part Of: Briefings in bioinformatics. Volume 24:Issue 1(2023)
• Publication Date: 2022-12-28
• Subjects: cancer subtyping -- Bayesian method -- paired methylation profiles -- clustering; Genetics -- Data processing -- Periodicals; Molecular biology -- Data processing -- Periodicals; Genomes -- Data processing -- Periodicals; 572.80285
• DOI: 10.1093/bib/bbac568
• Languages: English
• ISSNs: 1467-5463

Abstract

Abstract: Aberrant DNA methylation is the most common molecular lesion that is crucial for the occurrence and development of cancer, but has thus far been underappreciated as a clinical tool for cancer classification, diagnosis or as a guide for therapeutic decisions. Partly, this has been due to a lack of proven algorithms that can use methylation data to stratify patients into clinically relevant risk groups and subtypes that are of prognostic importance. Here, we proposed a novel Bayesian model to capture the methylation signatures of different subtypes from paired normal and tumor methylation array data. Application of our model to synthetic and empirical data showed high clustering accuracy, and was able to identify the possible epigenetic cause of a cancer subtype.