Finite cell-size effects on protein variability in Turing patterned tissues. Issue 133 (31st August 2017)

• Record Type: Journal Article
• Authors: Buceta, Javier
• Is Part Of: Journal of the Royal Society interface. Volume 14:Issue 133(2017)
• Publication Date: 2017-08-31
• Subjects: patterning -- noise -- Turing -- tissue -- development; Physical sciences -- Research -- Periodicals; Life sciences -- Research -- Periodicals; Interdisciplinary research -- Periodicals; 570.5
• DOI: 10.1098/rsif.2017.0316
• Languages: English
• ISSNs: 1742-5689

Abstract

Abstract : Herein we present a framework to characterize different sources of protein expression variability in Turing patterned tissues. In this context, we introduce the concept of granular noise to account for the unavoidable fluctuations due to finite cell-size effects and show that the nearest-neighbours autocorrelation function provides the means to measure it. To test our findings, we perform in silico experiments of growing tissues driven by a generic activator–inhibitor dynamics. Our results show that the relative importance of different sources of noise depends on the ratio between the characteristic size of cells and that of the pattern domains and on the ratio between the pattern amplitude and the effective intensity of the biochemical fluctuations. Importantly, our framework provides the tools to measure and distinguish different stochastic contributions during patterning: granularity versus biochemical noise. In addition, our analysis identifies the protein species that buffer the stochasticity the best and, consequently, it can help to determine key instructive signals in systems driven by a Turing instability. Altogether, we expect our study to be relevant in developmental processes leading to the formation of periodic patterns in tissues.