Addressable configurations of DNA nanostructures for rewritable memory. Issue 19 (30th August 2017)

• Record Type: Journal Article
• Authors: Chandrasekaran, Arun Richard; Levchenko, Oksana; Patel, Dhruv S.; MacIsaac, Molly; Halvorsen, Ken
• Is Part Of: Nucleic acids research. Volume 45:Issue 19(2017)
• Page Start: 11459
• Page End: 11465
• Publication Date: 2017-08-30
• Subjects: Nucleic acids -- Periodicals; Molecular biology -- Periodicals; 572.805
• DOI: 10.1093/nar/gkx777
• Languages: English
• ISSNs: 0305-1048

Abstract

Abstract: DNA serves as nature's information storage molecule, and has been the primary focus of engineered systems for biological computing and data storage. Here we combine recent efforts in DNA self-assembly and toehold-mediated strand displacement to develop a rewritable multi-bit DNA memory system. The system operates by encoding information in distinct and reversible conformations of a DNA nanoswitch and decoding by gel electrophoresis. We demonstrate a 5-bit system capable of writing, erasing, and rewriting binary representations of alphanumeric symbols, as well as compatibility with 'OR' and 'AND' logic operations. Our strategy is simple to implement, requiring only a single mixing step at room temperature for each operation and standard gel electrophoresis to read the data. We envision such systems could find use in covert product labeling and barcoding, as well as secure messaging and authentication when combined with previously developed encryption strategies. Ultimately, this type of memory has exciting potential in biomedical sciences as data storage can be coupled to sensing of biological molecules.