Emati: a recommender system for biomedical literature based on supervised learning. (9th December 2022)

• Record Type: Journal Article
• Authors: Kart, Özge; Mestiashvili, Alexandre; Lachmann, Kurt; Kwasnicki, Richard; Schroeder, Michael
• Is Part Of: Database. Volume 2022(2022)
• Publication Date: 2022-12-09
• Subjects: Biology -- Databases -- Periodicals; Bioinformatics -- Periodicals; 570.285
• DOI: 10.1093/database/baac104
• Languages: English
• ISSNs: 1758-0463

Abstract

Abstract: The scientific literature continues to grow at an ever-increasing rate. Considering that thousands of new articles are published every week, it is obvious how challenging it is to keep up with newly published literature on a regular basis. Using a recommender system that improves the user experience in the online environment can be a solution to this problem. In the present study, we aimed to develop a web-based article recommender service, called Emati. Since the data are text-based by nature and we wanted our system to be independent of the number of users, a content-based approach has been adopted in this study. A supervised machine learning model has been proposed to generate article recommendations. Two different supervised learning approaches, namely the naïve Bayes model with Term Frequency-Inverse Document Frequency (TF-IDF) vectorizer and the state-of-the-art language model bidirectional encoder representations from transformers (BERT), have been implemented. In the first one, a list of documents is converted into TF-IDF–weighted features and fed into a classifier to distinguish relevant articles from irrelevant ones. Multinomial naïve Bayes algorithm is used as a classifier since, along with the class label, it also gives the probability that the input belongs to this class. The second approach is based on fine-tuning the pretrained state-of-the-art language model BERT for the text classification task. Emati provides a weekly updated list of article recommendations and presents it to the user, sorted by probability scores. New article recommendations are also sent to users' email addresses on a weekly basis. Additionally, Emati has a personalized search feature to search online services' (such as PubMed and arXiv) content and have the results sorted by the user's classifier. Database URL : https://emati.biotec.tu-dresden.de