Assessing the effect of sample bias correction in species distribution models. (December 2022)

• Record Type: Journal Article
• Authors: Dubos, Nicolas; Préau, Clémentine; Lenormand, Maxime; Papuga, Guillaume; Monsarrat, Sophie; Denelle, Pierre; Louarn, Marine Le; Heremans, Stien; May, Roel; Roche, Philip; Luque, Sandra
• Is Part Of: Ecological indicators. Volume 145(2023)
• Publication Date: 2022-12
• Subjects: Accessibility maps -- Cross-validation -- Performance metrics -- Overlap -- Pseudo-absence selection -- Terrestrial vertebrates -- Variable selection -- Virtual species; Environmental monitoring -- Periodicals; Environmental management -- Periodicals; Environmental impact analysis -- Periodicals; Environmental risk assessment -- Periodicals; Sustainable development -- Periodicals; 333.71405
• DOI: 10.1016/j.ecolind.2022.109487
• Languages: English
• ISSNs: 1470-160X

Abstract

Highlights: Species distribution models increasingly use non-standardised, biased data. Sample bias can be corrected but standardised data is needed to assess its efficiency. We assess correction effects with multiple approaches on real and virtual species. Performance comparisons based on classic metrics (AUC, TSS, Boyce, cAUC) are misleading. The Relative Overlap Index (ROI), developed here, outperformed the other approaches. Abstract: 1. Open-source biodiversity databases contain a large number of species occurrence records but are often spatially biased; which affects the reliability of species distribution models based on these records. Sample bias correction techniques require data filtering which comes at the cost of record numbers, or require considerable additional sampling effort. Since independent data is rarely available, assessment of the correction technique often relies solely on performance metrics computed using subsets of the available – biased – data, which may prove misleading. 2. Here, we assess the extent to which an acknowledged sample bias correction technique is likely to improve models' ability to predict species distributions in the absence of independent data. We assessed variation in model predictions induced by the aforementioned correction and model stochasticity; the variability between model replicates related to a random component (pseudo-absences sets and cross-validation subsets). We present, then, an index of the effect of correction relative to model stochasticity; the Relative Overlap Index (ROI). We investigated whether the ROI better represented the effect of correction than classic performance metrics (Boyce index, cAUC, AUC and TSS) and absolute overlap metrics (Schoener's D, Pearson's and Spearman's correlation coefficients) when considering data related to 64 vertebrate species and 21 virtual species with a generated sample bias. 3. When based on absolute overlaps and cross-validation performance metrics, we found that correction produced no significant effects. When considering its effect relative to model stochasticity, the effect of correction was strong for most species at one of the three sites. The use of virtual species enabled us to verify that the correction technique improved both distribution predictions and the biological relevance of the selected variables at the specific site, when these were not correlated with sample bias patterns. 4. In the absence of additional independent data, the assessment of sample bias correction based on subsample data may be misleading. We propose to investigate both the biological relevance of environmental variables selected, and, the effect of sample bias correction based on its effect relative to model stochasticity.