Single-Cell Transcriptome Analysis Reveals Paraspeckles Expression in Osteosarcoma Tissues. (December 2022)

• Record Type: Journal Article
• Authors: Rothzerg, Emel; Feng, Wenyu; Song, Dezhi; Li, Hengyuan; Wei, Qingjun; Fox, Archa; Wood, David; Xu, Jiake; Liu, Yun
• Is Part Of: Cancer informatics. Volume 21(2022)
• Publication Date: 2022-12
• Subjects: Osteosarcoma -- paraspeckles -- lncRNA -- NEAT1 -- hnRNP -- tumour microenvironment -- single cell RNA sequencing; Bioinformatics -- Periodicals; Biology -- Data processing -- Periodicals; Cancer -- Periodicals; Cancer -- Research -- Periodicals; Computational biology -- Periodicals; 570.285
• DOI: 10.1177/11769351221140101
• Languages: English
• ISSNs: 1176-9351

Abstract

Nuclear paraspeckles are subnuclear bodies contracted by nuclear-enriched abundant transcript 1 (NEAT1) long non-coding RNA, localised in the interchromatin space of mammalian cell nuclei. Paraspeckles have been critically involved in tumour progression, metastasis and chemoresistance. To this date, there are limited findings to suggest that paraspeckles, NEAT1 and heterogeneous nuclear ribonucleoproteins (hnRNPs) directly or indirectly play roles in osteosarcoma progression. Herein, we analysed NEAT1, paraspeckle proteins (SFPQ, PSPC1 and NONO) and hnRNP members (HNRNPK, HNRNPM, HNRNPR and HNRNPD) gene expression in 6 osteosarcoma tumour tissues using the single-cell RNA-sequencing method. The normalised data highlighted that the paraspeckles transcripts were highly abundant in osteoblastic OS cells, except NEAT1, which was highly expressed in myeloid cell 1 and 2 subpopulations.