Increasing sample diversity in psychiatric genetics – Introducing a new cohort of patients with schizophrenia and controls from Vietnam – Results from a pilot study. (16th March 2022)

• Record Type: Journal Article
• Authors: Nguyen, V. T.; Braun, A.; Kraft, J.; Ta, T. M. T.; Panagiotaropoulou, G. M.; Nguyen, V. P.; Nguyen, T. H.; Trubetskoy, V.; Le, C. T.; Le, T. T. H.; Pham, X. T.; Heuser-Collier, I.; Lam, N. H.; Böge, K.; Hahne, I. M.; Bajbouj, M.; Zierhut, M. M.; Hahn, E.; Ripke, S.
• Is Part Of: World journal of biological psychiatry. Volume 23:Number 3(2022)
• Page Start: 219
• Page End: 227
• Publication Date: 2022-03-16
• Subjects: Schizophrenia -- GWAS -- Vietnam -- East-Asia -- polygenic prediction; Biological psychiatry -- Periodicals; Biological Psychiatry -- Periodicals; 616.89
• DOI: 10.1080/15622975.2021.1951474
• Languages: English
• ISSNs: 1562-2975

Abstract

Abstract: Objectives: Genome-Wide Association Studies (GWAS) of Schizophrenia (SCZ) have provided new biological insights; however, most cohorts are of European ancestry. As a result, derived polygenic risk scores (PRS) show decreased predictive power when applied to populations of different ancestries. We aimed to assess the feasibility of a large-scale data collection in Hanoi, Vietnam, contribute to international efforts to diversify ancestry in SCZ genetic research and examine the transferability of SCZ-PRS to individuals of Vietnamese Kinh ancestry. Methods: In a pilot study, 368 individuals (including 190 SCZ cases) were recruited at the Hanoi Medical University's associated psychiatric hospitals and outpatient facilities. Data collection included sociodemographic data, baseline clinical data, clinical interviews assessing symptom severity and genome-wide SNP genotyping. SCZ-PRS were generated using different training data sets: (i) European, (ii) East-Asian and (iii) trans-ancestry GWAS summary statistics from the latest SCZ GWAS meta-analysis. Results: SCZ-PRS significantly predicted case status in Vietnamese individuals using mixed-ancestry (R 2 liability = 4.9%, p = 6.83 × 10 −8 ), East-Asian (R 2 liability = 4.5%, p = 2.73 × 10 −7 ) and European (R 2 liability = 3.8%, p = 1.79 × 10 −6 ) discovery samples. Discussion: Our results corroborate previous findings of reduced PRS predictive power across populations, highlighting the importance of ancestral diversity in GWA studies.