Genome sequencing reveals chromosome fusion and extensive expansion of genes related to secondary metabolism in Artemisia argyi. Issue 10 (11th July 2022)

• Record Type: Journal Article
• Authors: Miao, Yuhuan; Luo, Dandan; Zhao, Tingting; Du, Hongzhi; Liu, Zhenhua; Xu, Zhongping; Guo, Lanping; Chen, Changjie; Peng, Sainan; Li, Jin Xin; Ma, Lin; Ning, Guogui; Liu, Dahui; Huang, Luqi
• Is Part Of: Plant biotechnology journal. Volume 20:Issue 10(2022)
• Page Start: 1902
• Page End: 1915
• Publication Date: 2022-07-11
• Subjects: Artemisia argyi genome -- genome evolution -- chromosome fusion -- gene expansion -- secondary metabolism; Plant biotechnology -- Periodicals; Plant genetic engineering -- Periodicals; 630.272
• DOI: 10.1111/pbi.13870
• Languages: English
• ISSNs: 1467-7644

Abstract

Summary: Artemisia argyi, as famous as Artemisia annua, is a medicinal plant with huge economic value in the genus of Artemisia and has been widely used in the world for about 3000 years. However, a lack of the reference genome severely hinders the understanding of genetic basis for the active ingredient synthesis of A. argyi . Here, we firstly report a complex chromosome‐level genome assembly of A. argyi with a large size of 8.03 Gb, with features of high heterozygosity (2.36%), high repetitive sequences (73.59%) and a huge number of protein‐coding genes (279 294 in total). The assembly reveals at least three rounds of whole‐genome duplication (WGD) events, including a recent WGD event in the A. argyi genome, and a recent burst of transposable element, which may contribute to its large genome size. The genomic data and karyotype analyses confirmed that A. argyi is an allotetraploid with 34 chromosomes. Intragenome synteny analysis revealed that chromosomes fusion event occurred in the A. argyi genome, which elucidates the changes in basic chromosome numbers in Artemisia genus. Significant expansion of genes related to photosynthesis, DNA replication, stress responses and secondary metabolism were identified in A. argyi, explaining the extensive environmental adaptability and rapid growth characteristics. In addition, we analysed genes involved in the biosynthesis pathways of flavonoids and terpenoids, and found that extensive gene amplification and tandem duplication contributed to the high contents of metabolites in A. argyi . Overall, the reference genome assembly provides scientific support for evolutionary biology, functional genomics and breeding in A. argyi and other Artemisia species. Abstract : Artemisia argyi is a medicinal plant with huge economic value. Here, Miao et al construct a chromosome‐level genome of A. argyi, revealing the chromosome fusion event and extensive expansion of genes related to flavonoids and terpenoids synthesis.