A novel four-gene signature for predicting the prognosis of hepatocellular carcinoma. (3rd October 2022)

• Record Type: Journal Article
• Authors: Sun, Ying; Chen, Zhi-Yong; Gan, Xia; Dai, Hua; Cai, Dan; Liu, Rong-Hua; Zhou, Jian-Ming; Zhang, Hong-Li; Li, Zi-Hua; Luo, Qing-Qing; Jiang, Song; Wang, Ting; Zhang, Kun-He
• Is Part Of: Scandinavian journal of gastroenterology. Volume 57:Number 10(2022)
• Page Start: 1227
• Page End: 1237
• Publication Date: 2022-10-03
• Subjects: Hepatocellular carcinoma -- prognosis -- gene signature -- prognostic score -- TCGA; Gastroenterology -- Periodicals; Digestive organs -- Diseases -- Periodicals; 616.33
• DOI: 10.1080/00365521.2022.2069476
• Languages: English
• ISSNs: 0036-5521

Abstract

Abstract: Objective: To identify and utilize gene signatures for the prognostic evaluation of postoperative patients with hepatocellular carcinoma (HCC). Methods: The gene mRNA expression profiles and corresponding clinicopathological data of postoperative patients with HCC were downloaded from The Cancer Genome Atlas (TCGA) database. Highly differentially expressed genes (DEGs) in tumor tissues compared to adjacent tissues were identified, and their associations with the overall survival (OS) of HCC patients were analyzed. The strongly associated genes were used to develop a prognostic score for the survival stratification of HCC, and the underlying mechanisms were analyzed using bioinformatics. Results: A total of 376 DEGs were identified and four DEGs ( ADH4, COL15A1, RET and KCNJ16 ) were independently associated with OS. A prognostic score derived from the four genes could effectively stratify HCC patients with different OS outcomes, independent of clinical parameters. Patients with high scores exhibited poorer OS than patients with low scores (HR 5.526, 95% CI: 2.451–12.461, p < .001). The four genes were involved in cancer-related biological processes and were independent of each other in bioinformatics analyses. Conclusion: Four genes strongly associated with the prognosis of postoperative patients with HCC were identified, and the derived prognostic score was simple and valuable for overall survival prediction.