Application of a classifier combining bronchial transcriptomics and chest computed tomography features facilitates the diagnostic evaluation of lung cancer in smokers and nonsmokers. Issue 6 (25th May 2021)

• Record Type: Journal Article
• Authors: Xia, Yang; Ying, Songmin; Jin, Rui; Wu, Hao; Shen, Ye; Yin, Tong; Yan, Fugui; Zhang, Wei; Lan, Fen; Zhang, Bin; Zhu, Chen; Li, Chen; Li, Wen; Shen, Huahao
• Is Part Of: International journal of cancer. Volume 149:Issue 6(2021)
• Page Start: 1290
• Page End: 1301
• Publication Date: 2021-05-25
• Subjects: classifier -- computed tomography -- lung cancer -- ribonucleic acid sequencing -- smoking; Cancer -- Periodicals; Cancer -- Prevention -- Periodicals; 616.994
• DOI: 10.1002/ijc.33675
• Languages: English
• ISSNs: 0020-7136

Abstract

Abstract: Lung cancer screening by computed tomography (CT) reduces mortality but exhibited high false‐positive rates. We established a diagnostic classifier combining chest CT features with bronchial transcriptomics. Patients with CT‐detected suspected lung cancer were enrolled. The sample collected by bronchial brushing was used for RNA sequencing. The e1071 and pROC packages in R software was applied to build the model. Eventually, a total of 283 patients, including 183 with lung cancer and 100 with benign lesions, were included into final analysis. When incorporating transcriptomic data with radiological characteristics, the advanced model yielded 0.903 AUC with 81.1% NPV. Moreover, the classifier performed well regardless of lesion size, location, stage, histologic type or smoking status. Pathway analysis showed enhanced epithelial differentiation, tumor metastasis, and impaired immunity were predominant in smokers with cancer, whereas tumorigenesis played a central role in nonsmokers with cancer. Apoptosis and oxidative stress contributed critically in metastatic lung cancer; by contrast, immune dysfunction was pivotal in locally advanced lung cancer. Collectively, we devised a minimal‐to‐noninvasive, efficient diagnostic classifier for smokers and nonsmokers with lung cancer, which provides evidence for different mechanisms of cancer development and metastasis associated with smoking. A negative classifier result will help the physician make conservative diagnostic decisions. Abstract : What's new? While lung cancer screening by low‐dose computed tomography (LDCT) is associated with reduced lung cancer mortality, its high false‐positive rate means that many patients are unnecessarily subjected to invasive diagnostic testing. Here, the authors devised a diagnostic classifier using chest features and information on gene expression derived from a combination of two minimally invasive techniques, standard chest CT and bronchial brushing. The model successfully predicted the risk of malignant pulmonary lesions in both smokers and non‐smokers and exhibited a strong negative predictive value. In addition, pathway analyses yielded evidence for different mechanisms of lung cancer development and metastasis associated with smoking.