Computer-aided drug design, quantum-mechanical methods for biological problems. (August 2022)

• Record Type: Journal Article
• Authors: Manathunga, Madushanka; Götz, Andreas W.; Merz, Kenneth M.
• Is Part Of: Current opinion in structural biology. Volume 75(2022)
• Publication Date: 2022-08
• Subjects: Molecular biology -- Periodicals; 570
• DOI: 10.1016/j.sbi.2022.102417
• Languages: English
• ISSNs: 0959-440X

Abstract

Abstract: Quantum chemistry enables to study systems with chemical accuracy (<1 kcal/mol from experiment) but is restricted to a handful of atoms due to its computational expense. This has led to ongoing interest to optimize and simplify these methods while retaining accuracy. Implementing quantum mechanical (QM) methods on modern hardware such as multiple-GPUs is one example of how the field is optimizing performance. Multiscale approaches like the so-called QM/molecular mechanical method are gaining popularity in drug discovery because they focus the application of QM methods on the region of choice ( e.g., the binding site), while using efficient MM models to represent less relevant areas. The creation of simplified QM methods is another example, including the use of machine learning to create ultra-fast and accurate QM models. Herein, we summarize recent advancements in the development of optimized QM methods that enhance our ability to use these methods in computer aided drug discovery.