EOCSA: Predicting prognosis of Epithelial ovarian cancer with whole slide histopathological images. (15th November 2022)

• Record Type: Journal Article
• Authors: Liu, Tianling; Su, Ran; Sun, Changming; Li, Xiuting; Wei, Leyi
• Is Part Of: Expert systems with applications. Volume 206(2022)
• Publication Date: 2022-11-15
• Subjects: Epithelial ovarian cancer -- WSI -- EOCSA -- DCAS -- Prognosis prediction -- Deep learning; Expert systems (Computer science) -- Periodicals; Systèmes experts (Informatique) -- Périodiques; Electronic journals; 006.33
• DOI: 10.1016/j.eswa.2022.117643
• Languages: English
• ISSNs: 0957-4174

Abstract

Abstract: Ovarian cancer is one of the most serious cancers that threaten women around the world. Epithelial ovarian cancer (EOC), as the most commonly seen subtype of ovarian cancer, has rather high mortality rate and poor prognosis among various gynecological cancers. Survival analysis outcome is able to provide treatment advices to doctors. In recent years, with the development of medical imaging technology, survival prediction approaches based on pathological images have been proposed. In this study, we designed a deep framework named EOCSA which analyzes the prognosis of EOC patients based on pathological whole slide images (WSIs). Specifically, we first randomly extracted patches from WSIs and grouped them into multiple clusters. Next, we developed a survival prediction model, named DeepConvAttentionSurv (DCAS), which was able to extract patch-level features, removed less discriminative clusters and predicted the EOC survival precisely. Particularly, channel attention, spatial attention, and neuron attention mechanisms were used to improve the performance of feature extraction. Then patient-level features were generated from our weight calculation method and the survival time was finally estimated using LASSO-Cox model. The proposed EOCSA is efficient and effective in predicting prognosis of EOC and the DCAS ensures more informative and discriminative features can be extracted. As far as we know, our work is the first to analyze the survival of EOC based on WSIs and deep neural network technologies. The experimental results demonstrate that our proposed framework has achieved state-of-the-art performance of 0.980 C-index. The implementation of the approach can be found at https://github.com/RanSuLab/EOCprognosis . Highlights: EOCSA is the first to use deep learning to process WSIs for EOC survival analysis. We develop an efficient deep survival analysis model named DCAS. We propose a new weight calculation method to obtain discriminative patient-level features.