Identifying phenotypic expansions for congenital diaphragmatic hernia plus (CDH+) using DECIPHER data. Issue 10 (29th July 2022)

• Record Type: Journal Article
• Authors: Hardcastle, Amy; Berry, Aliska M.; Campbell, Ian M.; Zhao, Xiaonan; Liu, Pengfei; Gerard, Amanda E.; Rosenfeld, Jill A.; Sisoudiya, Saumya D.; Hernandez‐Garcia, Andres; Loddo, Sara; Di Tommaso, Silvia; Novelli, Antonio; Dentici, Maria L.; Capolino, Rossella; Digilio, Maria C.; Graziani, Ludovico; Rustad, Cecilie F.; Neas, Katherine; Ferrero, Giovanni B.; Brusco, Alfredo; Di Gregorio, Eleonora; Wellesley, Diana; Beneteau, Claire; Joubert, Madeleine; Van Den Bogaert, Kris; Boogaerts, Anneleen; McMullan, Dominic J.; Dean, John; Giuffrida, Maria G.; Bernardini, Laura; Varghese, Vinod; Shannon, Nora L.; Harrison, Rachel E.; Lam, Wayne W. K.; McKee, Shane; Turnpenny, Peter D.; Cole, Trevor; Morton, Jenny; Eason, Jacqueline; Jones, Marilyn C.; Hall, Rebecca; Wright, Michael; Horridge, Karen; Shaw, Chad A.; Chung, Wendy K.; Scott, Daryl A.;
• Is Part Of: American journal of medical genetics. Volume 188:Issue 10(2022)
• Page Start: 2958
• Page End: 2968
• Publication Date: 2022-07-29
• Subjects: congenital diaphragmatic hernia -- CREBBP -- DECIPHER database -- SMARCA4 -- UBA2 -- USP9X; Medical genetics -- Periodicals; 616.14205
• DOI: 10.1002/ajmg.a.62919
• Languages: English
• ISSNs: 1552-4825

Abstract

Abstract: Congenital diaphragmatic hernia (CDH) can occur in isolation or in conjunction with other birth defects (CDH+). A molecular etiology can only be identified in a subset of CDH cases. This is due, in part, to an incomplete understanding of the genes that contribute to diaphragm development. Here, we used clinical and molecular data from 36 individuals with CDH+ who are cataloged in the DECIPHER database to identify genes that may play a role in diaphragm development and to discover new phenotypic expansions. Among this group, we identified individuals who carried putatively deleterious sequence or copy number variants affecting CREBBP, SMARCA4, UBA2, and USP9X . The role of these genes in diaphragm development was supported by their expression in the developing mouse diaphragm, their similarity to known CDH genes using data from a previously published and validated machine learning algorithm, and/or the presence of CDH in other individuals with their associated genetic disorders. Our results demonstrate how data from DECIPHER, and other public databases, can be used to identify new phenotypic expansions and suggest that CREBBP, SMARCA4, UBA2, and USP9X play a role in diaphragm development.