Genome‐wide characterization and function analysis uncovered roles of wheat LIMs in responding to adverse stresses and TaLIM8‐4D function as a susceptible gene. Issue 3 (27th July 2022)

• Record Type: Journal Article
• Authors: Li, Yiting; Liu, Xi; Xiao, Yongxin; Wen, Yong; Li, Keke; Ma, Zhaolan; Yang, Lijun; Zhu, Yongxing; Yin, Junliang
• Is Part Of: œplant genome. Volume 15:Issue 3(2022)
• Page Start: n/a
• Page End: n/a
• Publication Date: 2022-07-27
• Subjects: Plant genomes -- Periodicals; Plant genome mapping -- Periodicals; 572.862
• DOI: 10.1002/tpg2.20246
• Languages: English
• ISSNs: 1940-3372

Abstract

Abstract: The L in‐11, I sl‐1, and M ec‐3 domains (LIM) transcription factors play essential roles in regulating plant biological processes. Despite that, there is a lack of a full understanding of LIMs in wheat ( Triticum aestivum L.). In this study, 28 wheat LIM s (TaLIMs) were identified and designated as TaLIM1‐1A to TaLIM12‐7D. The cis ‐regulatory element analysis showed that TaLIMs were rich in elements related to biological and abiotic stresses. Expression profiling analysis showed that certain members of TaLIMs were responsive to biotic and abiotic stresses, such as TaLIM1‐1A, TaLIM3‐2B, TaLIM8‐4D, and TaLIM10‐5D, were significantly induced by heat, drought, sodium chloride (NaCl), abscisic acid (ABA) and Fusarium graminearum stresses. Furthermore, the biological function of TaLIM8‐4D was analyzed and results showed that it was subcellular localization in the nucleus and could induce weak cell death in Nicotiana benthamiana leaves. Additionally, overexpression of TaLIM8‐4D could upregulate plant pathogenesis‐related ( PR ) genes, promoting the infection of hemibiotrophic pathogen, implying that TaLIM8‐4D could function as susceptible gene in the nucleus by upregulating PR genes and inducing cell death to promote the colonization of hemibiotrophic agent F . graminearum . Overall, the systematic identification, characterization, expression profiling, evolutionary, and function analyses provided the ability to understand TaLIMs and laid a foundation for the further function study of LIM family members in wheat. Core Ideas: The wheat genome contains 28 TaLIM genes. TaLIMs are responsive to abiotic and biotic stresses. TaLIM8‐4D is a cell‐death inducer localized in the nucleus. TaLIM8‐4D was a susceptible gene and its overexpression can promote the infection of Fusarium graminearum . TaLIM8‐4D upregulates PR genes and induces cell death to promote the colonization of hemibiotrophic pathogen.